Basic Information | |
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Species | Cucumis sativus |
Cazyme ID | Cucsa.390850.1 |
Family | CE8 |
Protein Properties | Length: 360 Molecular Weight: 40012.2 Isoelectric Point: 8.5762 |
Chromosome | Chromosome/Scaffold: 04031 Start: 47812 End: 51437 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 61 | 353 | 0 |
IVVDKNCSGDSTTVQGAVDMVPHNNKQRVKIYILPGIYREKVYIPITKPYISLIGNKNRVTDTVITWNDKASDKSIDGVELGTYRTATVAIDSDYFCATG ITFENTVVAKPGDKGRQGVALRITGDKAMFYRVKFLGGQDTLLDDLGTHYYYQCHIQGSVDFIFGTARSLYEQCVITSTAESYGAIAAHHRASPDDDTGF SFVRCVINGSGKVYLGRAWGNYSRTIYSNCYIEDVINPLGWSDWNDPSRQRTVAFGQYNCRGSGASTKDWVKWAKTFNYEEVRPFVDRKYIKG |
Full Sequence |
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Protein Sequence Length: 360 Download |
MNNGGFFPCI IVLGFLLLCV AGGSSGRGRG GVISWDDLRV DVWRRQRMSS SEGLGNGTRI 60 IVVDKNCSGD STTVQGAVDM VPHNNKQRVK IYILPGIYRE KVYIPITKPY ISLIGNKNRV 120 TDTVITWNDK ASDKSIDGVE LGTYRTATVA IDSDYFCATG ITFENTVVAK PGDKGRQGVA 180 LRITGDKAMF YRVKFLGGQD TLLDDLGTHY YYQCHIQGSV DFIFGTARSL YEQCVITSTA 240 ESYGAIAAHH RASPDDDTGF SFVRCVINGS GKVYLGRAWG NYSRTIYSNC YIEDVINPLG 300 WSDWNDPSRQ RTVAFGQYNC RGSGASTKDW VKWAKTFNYE EVRPFVDRKY IKGEQWLNL* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 1.0e-87 | 60 | 357 | 298 | + putative pectinesterase | ||
PLN02304 | PLN02304 | 6.0e-89 | 56 | 357 | 311 | + probable pectinesterase | ||
PLN02634 | PLN02634 | 1.0e-98 | 57 | 357 | 303 | + probable pectinesterase | ||
PLN02682 | PLN02682 | 5.0e-110 | 58 | 359 | 304 | + pectinesterase family protein | ||
PLN02671 | PLN02671 | 0 | 33 | 359 | 327 | + pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEE67559.1 | 0 | 28 | 359 | 29 | 398 | hypothetical protein OsJ_25062 [Oryza sativa Japonica Group] |
RefSeq | NP_200370.1 | 0 | 1 | 359 | 1 | 380 | QRT1 (QUARTET 1); pectinesterase [Arabidopsis thaliana] |
RefSeq | XP_002264297.1 | 0 | 1 | 359 | 1 | 359 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002298857.1 | 0 | 44 | 359 | 4 | 318 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002522727.1 | 0 | 33 | 359 | 59 | 383 | Pectinesterase U1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 5.00264e-43 | 61 | 357 | 9 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 4e-36 | 62 | 357 | 6 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 0.0000000000004 | 62 | 329 | 34 | 339 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 1qjv_B | 0.00000000009 | 62 | 238 | 7 | 192 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 0.00000000009 | 62 | 238 | 7 | 192 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |