Basic Information | |
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Species | Cucumis sativus |
Cazyme ID | Cucsa.391620.1 |
Family | PL1 |
Protein Properties | Length: 414 Molecular Weight: 45210.9 Isoelectric Point: 7.2161 |
Chromosome | Chromosome/Scaffold: 04062 Start: 70223 End: 72578 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 133 | 333 | 0 |
WIIFARDMVIRLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGLNIHDCKQGGNTDVRDSPRHFGFRTISDGDGVSIFGGSHVWVDHCSLSN CNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAAPTINSQGNRFVA P |
Full Sequence |
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Protein Sequence Length: 414 Download |
MAPPALPLSL LSLFLFLFSI SLSAALSPNP AAVSNPELVV QEVHRSIINA TKRRNLGYLS 60 CGTGNPIDDC WRCDSNWEKN RQRLADCGIG FGKNAIGGRD GKIYVVTDSG DDDPVNPKPG 120 TLRYAVIQDE PLWIIFARDM VIRLKEELIM NSFKTIDGRG ASVHIAGGPC ITIQYVTNII 180 IHGLNIHDCK QGGNTDVRDS PRHFGFRTIS DGDGVSIFGG SHVWVDHCSL SNCNDGLIDA 240 IHGSTAITIS NNYMTHHDKV MLLGHSDSYT QDKNMQVTIA FNHFGEGLVQ RMPRCRHGYF 300 HVVNNDYTHW EMYAIGGSAA PTINSQGNRF VAPNDRFSKE VTKYEDAPES EWKNWHWRSE 360 GDLMLNGAYF TASGAGASSS YARASSLGAR PSSLVGTITT NAGALNCRKG SRC* 420 |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
COG3866 | PelB | 5.0e-27 | 152 | 330 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] |
pfam00544 | Pec_lyase_C | 3.0e-71 | 145 | 330 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. |
smart00656 | Amb_all | 7.0e-80 | 139 | 334 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ADB90475.1 | 0 | 34 | 413 | 34 | 411 | pectate lyase [Gossypium herbaceum] |
GenBank | ADB90479.1 | 0 | 34 | 413 | 34 | 411 | pectate lyase [Gossypium barbadense] |
EMBL | CAN76500.1 | 0 | 31 | 413 | 23 | 403 | hypothetical protein [Vitis vinifera] |
EMBL | CBI14899.1 | 0 | 31 | 413 | 23 | 403 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002275781.1 | 0 | 31 | 413 | 78 | 458 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 65 | 405 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 65 | 405 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 4e-18 | 84 | 331 | 2 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_B | 2e-16 | 219 | 404 | 151 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_A | 2e-16 | 219 | 404 | 151 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |