| Basic Information | |
|---|---|
| Species | Cucumis sativus |
| Cazyme ID | Cucsa.394250.1 |
| Family | GH28 |
| Protein Properties | Length: 506 Molecular Weight: 55071.3 Isoelectric Point: 6.7687 |
| Chromosome | Chromosome/Scaffold: 04100 Start: 279013 End: 282965 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 114 | 456 | 0 |
| EACKVEGSTVMVPADYVFFVGPISFSGPYCQPDIIFQLDGTIIAPTDHQTWGKGLLQWIQFTKLVRITIRGNGIIDGRGSVWWQDSSFDEPIDDEMKLII PVNNTINETKPTPIGSNLEGKMPSIKPTALRFYGSFNATVTGITIQNSPQCHLKFDNCVGVLVHDISVSSPGDSLNTDGIHLQNSKDVLIHSTSLSCGDD CVSIQTGCSNIYIHNVNCGPGHGISIGSLGKDHTKACVSNITVRDVTMHDTMNGVRIKTWQGGSGSVQNVLFSNIQMSEVQLPIVIDQFYCDKAKCSNQT SAVALSGINYERIRGTYTVKPVHFACSDNLPCTDVTLTTIELK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 506 Download |
| MSSKSLTLVV FIAFLVWSSN FEACIARRGK HWRQNRDASA SLSKKKGSHG GSKNHHSGAP 60 PSPLPPKPKE EIVQTPPKKG PSAGDSAIFN VLDFGAKGNG ETDDTKAFED AWAEACKVEG 120 STVMVPADYV FFVGPISFSG PYCQPDIIFQ LDGTIIAPTD HQTWGKGLLQ WIQFTKLVRI 180 TIRGNGIIDG RGSVWWQDSS FDEPIDDEMK LIIPVNNTIN ETKPTPIGSN LEGKMPSIKP 240 TALRFYGSFN ATVTGITIQN SPQCHLKFDN CVGVLVHDIS VSSPGDSLNT DGIHLQNSKD 300 VLIHSTSLSC GDDCVSIQTG CSNIYIHNVN CGPGHGISIG SLGKDHTKAC VSNITVRDVT 360 MHDTMNGVRI KTWQGGSGSV QNVLFSNIQM SEVQLPIVID QFYCDKAKCS NQTSAVALSG 420 INYERIRGTY TVKPVHFACS DNLPCTDVTL TTIELKPLQE RYHLYDPFCW QTFGELRTPT 480 SPPIGCLQIG KPSSNRVQYE ENDSC* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 3.0e-81 | 86 | 456 | 375 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03010 | PLN03010 | 2.0e-81 | 88 | 455 | 373 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-82 | 121 | 455 | 336 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 3.0e-90 | 90 | 456 | 371 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 3.0e-108 | 70 | 483 | 421 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK95830.1 | 0 | 1 | 505 | 7 | 516 | unknown [Populus trichocarpa] |
| RefSeq | NP_564758.2 | 0 | 1 | 505 | 7 | 539 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002266600.1 | 0 | 1 | 505 | 4 | 505 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002311773.1 | 0 | 1 | 505 | 7 | 517 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002525361.1 | 0 | 1 | 505 | 4 | 519 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 3e-23 | 165 | 406 | 96 | 317 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 9e-21 | 167 | 455 | 54 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 9e-21 | 167 | 455 | 54 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 9e-21 | 167 | 455 | 54 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 9e-21 | 167 | 455 | 54 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
