Basic Information | |
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Species | Cucumis sativus |
Cazyme ID | Cucsa.394640.1 |
Family | PL1 |
Protein Properties | Length: 297 Molecular Weight: 32729.6 Isoelectric Point: 8.2301 |
Chromosome | Chromosome/Scaffold: 04100 Start: 491202 End: 493217 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 128 | 296 | 0 |
VIQKEPLWITFKRDMVIKLKAELLMNSFKTIDGRGVSVHIAGGPCITIQFVTNIIIHGINIHDCKQGGNTYVRDSPEHYGWRTVSDGDGISIFGGSHVWI DHCSLSNCRDGLIDAIHGSTAITVSNNYMTHHNKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPR |
Full Sequence |
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Protein Sequence Length: 297 Download |
MENSNSVVIM MSIKLLVLSI VMLQMSSMSS SSPVPDPDLV AQEVLTSINN ATITRRNLGF 60 LSCKTGNPID DCWRCDANWE KNRKKLADCA IGFGKRAIGG KNGKYYIVTD PSDNDVVNPK 120 PGTLRHAVIQ KEPLWITFKR DMVIKLKAEL LMNSFKTIDG RGVSVHIAGG PCITIQFVTN 180 IIIHGINIHD CKQGGNTYVR DSPEHYGWRT VSDGDGISIF GGSHVWIDHC SLSNCRDGLI 240 DAIHGSTAIT VSNNYMTHHN KVMLLGHSDS YTQDKNMQVT IAFNHFGEGL VQRMPR* 300 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 4.0e-17 | 154 | 296 | 152 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 6.0e-39 | 131 | 296 | 175 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 9.0e-48 | 141 | 296 | 167 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABO28477.1 | 0 | 27 | 296 | 19 | 287 | pectate lyase precursor [Glycine max] |
GenBank | ACU21247.1 | 0 | 27 | 296 | 19 | 287 | unknown [Glycine max] |
EMBL | CAN76500.1 | 0 | 30 | 296 | 21 | 284 | hypothetical protein [Vitis vinifera] |
EMBL | CBI14899.1 | 0 | 30 | 296 | 21 | 284 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002275781.1 | 0 | 30 | 296 | 76 | 339 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 67 | 296 | 2 | 232 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 67 | 296 | 2 | 232 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 0.000000000004 | 142 | 296 | 56 | 200 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1bn8_A | 0.00000000003 | 104 | 296 | 108 | 303 | A Chain A, Bacillus Subtilis Pectate Lyase |
PDB | 3krg_A | 0.00000000007 | 104 | 296 | 87 | 282 | A Chain A, Structural Insights Into Substrate Specificity And The Anti Beta-Elimination Mechanism Of Pectate Lyase |