y
Basic Information | |
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Species | Cucumis sativus |
Cazyme ID | Cucsa.394640.2 |
Family | PL1 |
Protein Properties | Length: 275 Molecular Weight: 30137.9 Isoelectric Point: 9.2157 |
Chromosome | Chromosome/Scaffold: 04100 Start: 491202 End: 492624 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 3 | 193 | 0 |
IKLKAELLMNSFKTIDGRGVSVHIAGGPCITIQFVTNIIIHGINIHDCKQGGNTYVRDSPEHYGWRTVSDGDGISIFGGSHVWIDHCSLSNCRDGLIDAI HGSTAITVSNNYMTHHNKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWIMYAIGGSASPTINSQGNRYLA |
Full Sequence |
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Protein Sequence Length: 275 Download |
MVIKLKAELL MNSFKTIDGR GVSVHIAGGP CITIQFVTNI IIHGINIHDC KQGGNTYVRD 60 SPEHYGWRTV SDGDGISIFG GSHVWIDHCS LSNCRDGLID AIHGSTAITV SNNYMTHHNK 120 VMLLGHSDSY TQDKNMQVTI AFNHFGEGLV QRMPRCRHGY FHVVNNDYTH WIMYAIGGSA 180 SPTINSQGNR YLAPNNQNSK EVTKREDTPQ SRWKNWNWRS DGDLMLNGAF FVRSGAGASS 240 SYARASSLSA KSSSLINSIT AGAGVLKCRK GSRC* 300 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 3.0e-23 | 13 | 189 | 188 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-59 | 11 | 191 | 190 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 4.0e-69 | 1 | 195 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAB59066.1 | 0 | 1 | 274 | 136 | 409 | pectate lyase [Salix gilgiana] |
EMBL | CAN76500.1 | 0 | 1 | 274 | 130 | 403 | hypothetical protein [Vitis vinifera] |
EMBL | CBI14899.1 | 0 | 1 | 274 | 130 | 403 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002275781.1 | 0 | 1 | 274 | 185 | 458 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002285340.1 | 0 | 1 | 274 | 130 | 403 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 1 | 266 | 76 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 1 | 266 | 76 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 7e-18 | 1 | 182 | 56 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_B | 9e-17 | 55 | 264 | 120 | 357 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_A | 9e-17 | 55 | 264 | 120 | 357 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EB428296 | 265 | 1 | 265 | 0 |
BQ505865 | 268 | 1 | 268 | 0 |
EX663952 | 274 | 1 | 274 | 0 |
EE063141 | 232 | 1 | 232 | 0 |
EB425777 | 231 | 1 | 231 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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