Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.A00432.1 |
Family | GH28 |
Protein Properties | Length: 348 Molecular Weight: 36600.6 Isoelectric Point: 9.4806 |
Chromosome | Chromosome/Scaffold: 1 Start: 6271513 End: 6273383 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 7 | 335 | 0 |
WSSACGSAVPATVYVPQGNFVLNPVVFTGPCKNRILFLIAGTLIAPSNYWSLGNSGYWILFNKVTRVTVHGGTLNARGSGYWACKSSGKSCPVGARSISL EGSSNVVISGITSMNSQNIYIAIDNCVNVLIQNVKIRAPSQSPNTDGIHISSSTGVTIASSSFMTGDDCISIGPGSKNVWIQRVACGPGHGISVGSLAEN ANEEGVENVTVTGAVFTGTQNGVRIKSWGRPSTGFARTISFRNIIMKNVFNPIIIDQNYCPSNTNCPNQNSGVKISQVTYKNIKGTSATPVAMNFVCSPT NPCSGIALQNIELKYLTAQATSYCKNAGG |
Full Sequence |
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Protein Sequence Length: 348 Download |
MAFQRAWSSA CGSAVPATVY VPQGNFVLNP VVFTGPCKNR ILFLIAGTLI APSNYWSLGN 60 SGYWILFNKV TRVTVHGGTL NARGSGYWAC KSSGKSCPVG ARSISLEGSS NVVISGITSM 120 NSQNIYIAID NCVNVLIQNV KIRAPSQSPN TDGIHISSST GVTIASSSFM TGDDCISIGP 180 GSKNVWIQRV ACGPGHGISV GSLAENANEE GVENVTVTGA VFTGTQNGVR IKSWGRPSTG 240 FARTISFRNI IMKNVFNPII IDQNYCPSNT NCPNQNSGVK ISQVTYKNIK GTSATPVAMN 300 FVCSPTNPCS GIALQNIELK YLTAQATSYC KNAGGSSRGI VVPRSCF* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 7.0e-75 | 2 | 344 | 350 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 2.0e-77 | 11 | 333 | 325 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 1.0e-84 | 2 | 346 | 352 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02793 | PLN02793 | 5.0e-88 | 2 | 347 | 354 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 1.0e-131 | 2 | 347 | 347 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002309713.1 | 0 | 3 | 346 | 46 | 389 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331632.1 | 0 | 2 | 347 | 44 | 391 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331634.1 | 0 | 3 | 347 | 46 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529094.1 | 0 | 2 | 347 | 44 | 390 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529095.1 | 0 | 2 | 347 | 44 | 390 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-21 | 77 | 300 | 124 | 344 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 5e-16 | 69 | 332 | 69 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 5e-16 | 69 | 332 | 69 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 5e-16 | 69 | 332 | 69 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 5e-16 | 69 | 332 | 69 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
JZ191937 | 299 | 49 | 347 | 0 |
JZ194028 | 289 | 42 | 330 | 0 |
DY281549 | 297 | 2 | 296 | 0 |
JZ195343 | 282 | 6 | 286 | 0 |
JZ192826 | 286 | 47 | 332 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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