y
Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.A01063.1 |
Family | GH28 |
Protein Properties | Length: 175 Molecular Weight: 18133.5 Isoelectric Point: 7.3104 |
Chromosome | Chromosome/Scaffold: 1 Start: 16366365 End: 16367337 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 1 | 154 | 0 |
MTITGVTCGPGHGISVGSLGKYPNEQPVTGLHVKNCTMTGTMNGLRIKTWPASPAGTASDMHFEDITLDNVGNPVIIDQQYCPWNQCKSQAPSQIKISNV SFSRIRGTSSTQAAVTLACSSRLPCTEVEISDIDIAYHGPEGPATSVCSNVKPT |
Full Sequence |
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Protein Sequence Length: 175 Download |
MTITGVTCGP GHGISVGSLG KYPNEQPVTG LHVKNCTMTG TMNGLRIKTW PASPAGTASD 60 MHFEDITLDN VGNPVIIDQQ YCPWNQCKSQ APSQIKISNV SFSRIRGTSS TQAAVTLACS 120 SRLPCTEVEI SDIDIAYHGP EGPATSVCSN VKPTISGKQN PAICASAAAS PVSQ* 180 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 3.0e-35 | 1 | 152 | 152 | + polygalacturonase | ||
PLN02155 | PLN02155 | 2.0e-35 | 3 | 164 | 162 | + polygalacturonase | ||
PLN02793 | PLN02793 | 2.0e-35 | 1 | 174 | 175 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 3.0e-54 | 3 | 156 | 154 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 3.0e-64 | 1 | 165 | 166 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI22049.1 | 0 | 1 | 163 | 171 | 333 | unnamed protein product [Vitis vinifera] |
Swiss-Prot | P24548 | 0 | 1 | 169 | 191 | 359 | PGLR_OENOR RecName: Full=Exopolygalacturonase; Short=ExoPG; AltName: Full=Pectinase; AltName: Full=Galacturan 1,4-alpha-galacturonidase |
RefSeq | XP_002282563.1 | 0 | 1 | 165 | 231 | 395 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002282573.1 | 0 | 1 | 165 | 231 | 395 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002282594.1 | 0 | 1 | 165 | 231 | 395 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 0.00000002 | 1 | 157 | 187 | 336 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 0.00000002 | 1 | 157 | 187 | 336 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 0.00000002 | 1 | 157 | 187 | 336 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 0.00000002 | 1 | 157 | 187 | 336 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 0.00000002 | 1 | 157 | 187 | 336 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HS262336 | 160 | 1 | 160 | 0 |
HS017114 | 160 | 1 | 160 | 0 |
CU617665 | 168 | 1 | 168 | 0 |
CU533490 | 162 | 7 | 168 | 0 |
CU615686 | 163 | 6 | 168 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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