Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.A01065.1 |
Family | GH28 |
Protein Properties | Length: 467 Molecular Weight: 49696.1 Isoelectric Point: 5.2489 |
Chromosome | Chromosome/Scaffold: 1 Start: 16382891 End: 16385574 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 113 | 446 | 0 |
WKEACAATEASKVLVPAGTYVLREVVLEGPCKSSIEVQVDGTLQAPADPAQMKTDGWVAFRGVDLLTLSGSGTFDGQGKTAWTKNDCNLKTDCVTLPINI RFDSVTNGMVKDITSLDSKQFHVNVLNCKNLTFQHVTITAPGDSPNTDGIHIGRSTGINIIDTGIKTGDDCISIGDGSEQMTITGVTCGPGHGISVGSLG KYPNEQPVTGLHVKNCTMTGTMNGLRIKTWPASPAGTASDMHFEDITLDNVGNPVIIDQQYCPWNQCKSQAPSQIKISNVSFSRIRGTSSTQAAVTLACS SRLPCTEVEISDIDIAYHGPEGPATSVCSNVKPT |
Full Sequence |
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Protein Sequence Length: 467 Download |
MNYDIGKFGR HFRPDLRICP NLPSGDPDIL QDWRNIAESD NVGKQLIIQW IYNEEAEERR 60 QQWVEMGKIS ILPAAIALLF FASTARSLVC DIAKYGAGGG TSSDITQALV SAWKEACAAT 120 EASKVLVPAG TYVLREVVLE GPCKSSIEVQ VDGTLQAPAD PAQMKTDGWV AFRGVDLLTL 180 SGSGTFDGQG KTAWTKNDCN LKTDCVTLPI NIRFDSVTNG MVKDITSLDS KQFHVNVLNC 240 KNLTFQHVTI TAPGDSPNTD GIHIGRSTGI NIIDTGIKTG DDCISIGDGS EQMTITGVTC 300 GPGHGISVGS LGKYPNEQPV TGLHVKNCTM TGTMNGLRIK TWPASPAGTA SDMHFEDITL 360 DNVGNPVIID QQYCPWNQCK SQAPSQIKIS NVSFSRIRGT SSTQAAVTLA CSSRLPCTEV 420 EISDIDIAYH GPEGPATSVC SNVKPTISGK QNPAICTSAA ASPVSQ* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 4.0e-84 | 92 | 444 | 359 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 2.0e-84 | 84 | 456 | 374 | + polygalacturonase | ||
PLN02793 | PLN02793 | 4.0e-91 | 92 | 466 | 381 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 8.0e-123 | 117 | 448 | 332 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 3.0e-137 | 85 | 457 | 375 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAA89476.1 | 0 | 69 | 456 | 3 | 393 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89477.1 | 0 | 82 | 456 | 20 | 393 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89478.1 | 0 | 82 | 456 | 20 | 393 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89479.1 | 0 | 89 | 456 | 30 | 393 | polygalacturonase [Salix gilgiana] |
RefSeq | XP_002329175.1 | 0 | 78 | 456 | 16 | 393 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 5e-17 | 180 | 427 | 113 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 2e-16 | 114 | 449 | 15 | 336 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 2e-16 | 114 | 449 | 15 | 336 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 2e-16 | 114 | 449 | 15 | 336 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 2e-16 | 114 | 449 | 15 | 336 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CU617067 | 289 | 85 | 372 | 0 |
EY196848 | 267 | 186 | 452 | 0 |
EX164190 | 267 | 186 | 452 | 0 |
EE255351 | 287 | 89 | 375 | 0 |
CO101156 | 284 | 93 | 375 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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