Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.A01068.1 |
Family | GH28 |
Protein Properties | Length: 402 Molecular Weight: 41869.4 Isoelectric Point: 5.8913 |
Chromosome | Chromosome/Scaffold: 1 Start: 16403407 End: 16405144 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 48 | 381 | 0 |
WKEACAATEASKVLVPAGTYVLREVVLEGPCKSSIEVQVDGTLQAPADPAQMKTDGWVAFRGVDLLTLSGSGTFDGQGKTAWTKNDCNLKTDCVTLPINI RFDSVTNGMVKDITSLDSKQFHVNVLNCKNLTFQHVTITAPGDSPNTDGIHIGRSTGINIIDTGIKTGDDCISIGDGSEQMTITGVTCGPGHGISVGSLG KYPNEQPVTGLHVKNCTMTGTMNGLRIKTWPASPAGTASDMHFEDITLDNVGNPVIIDQQYCPWNQCKSQAPSQIKISNVSFSRIRGTSSTQAAVTLACS SRLPCTEVEISDIDIAYHGPEGPATSVCSNVKPT |
Full Sequence |
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Protein Sequence Length: 402 Download |
MGKISILPAA IALLFFASTA RSLVCDIAKY GAGGGTSSDI TQALVSAWKE ACAATEASKV 60 LVPAGTYVLR EVVLEGPCKS SIEVQVDGTL QAPADPAQMK TDGWVAFRGV DLLTLSGSGT 120 FDGQGKTAWT KNDCNLKTDC VTLPINIRFD SVTNGMVKDI TSLDSKQFHV NVLNCKNLTF 180 QHVTITAPGD SPNTDGIHIG RSTGINIIDT GIKTGDDCIS IGDGSEQMTI TGVTCGPGHG 240 ISVGSLGKYP NEQPVTGLHV KNCTMTGTMN GLRIKTWPAS PAGTASDMHF EDITLDNVGN 300 PVIIDQQYCP WNQCKSQAPS QIKISNVSFS RIRGTSSTQA AVTLACSSRL PCTEVEISDI 360 DIAYHGPEGP ATSVCSNVKP TISGKQNPAI CASAAASPVS Q* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 1.0e-82 | 19 | 391 | 374 | + polygalacturonase | ||
PLN02218 | PLN02218 | 3.0e-83 | 27 | 379 | 359 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 7.0e-91 | 27 | 401 | 381 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 4.0e-120 | 52 | 383 | 332 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 9.0e-136 | 20 | 392 | 375 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAA89476.1 | 0 | 4 | 391 | 3 | 393 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89477.1 | 0 | 17 | 391 | 20 | 393 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89478.1 | 0 | 17 | 391 | 20 | 393 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89479.1 | 0 | 24 | 391 | 30 | 393 | polygalacturonase [Salix gilgiana] |
RefSeq | XP_002329175.1 | 0 | 13 | 391 | 16 | 393 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-17 | 115 | 362 | 113 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 1e-16 | 49 | 384 | 15 | 336 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 1e-16 | 49 | 384 | 15 | 336 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 1e-16 | 49 | 384 | 15 | 336 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 1e-16 | 49 | 384 | 15 | 336 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |