| Basic Information | |
|---|---|
| Species | Eucalyptus grandis |
| Cazyme ID | Eucgr.A01218.1 |
| Family | PL1 |
| Protein Properties | Length: 385 Molecular Weight: 42684.4 Isoelectric Point: 8.1885 |
| Chromosome | Chromosome/Scaffold: 1 Start: 19018565 End: 19023127 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 116 | 293 | 0 |
| FELSGSIHLSSYLNVSSYKTIDGRGQRIKITGKGLRLKESEHVIICNLEFEGGRGPDVDGIQIKPNSKHIWIDRCSLRDYEDGLIDITRQSTDITISRCH FSAHDKTILIGADPSHVEDRCIRVTIHHCFFDGTRQRHPRVRFAKVHLYNNYTRNWGIYAVCASVESQIFSQCNIYEA | |||
| Full Sequence |
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| Protein Sequence Length: 385 Download |
| MGNACGRRTR HRHDTRPPTV PFPDKIVPQA PHIPPPNYGP APPDPLSTRN GRVMGSLPYA 60 HVDSALRSLA GQAEGFGRSA VGGLHGPLYR VTTLADDGPG SLRDGCRKKE PLWIVFELSG 120 SIHLSSYLNV SSYKTIDGRG QRIKITGKGL RLKESEHVII CNLEFEGGRG PDVDGIQIKP 180 NSKHIWIDRC SLRDYEDGLI DITRQSTDIT ISRCHFSAHD KTILIGADPS HVEDRCIRVT 240 IHHCFFDGTR QRHPRVRFAK VHLYNNYTRN WGIYAVCASV ESQIFSQCNI YEAGQKKLAF 300 KYLTEKAADK EVLGTGHIRS EGDLFMVGTQ PGLMTDQAEH CVFHPSECYP TWTVEPPTDS 360 LKQVLQHCTG WQSVPLPVDH GVAA* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00544 | Pec_lyase_C | 5.0e-39 | 109 | 289 | 201 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| COG3866 | PelB | 6.0e-47 | 63 | 364 | 324 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| smart00656 | Amb_all | 1.0e-67 | 128 | 294 | 179 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK93648.1 | 0 | 1 | 384 | 1 | 385 | unknown [Populus trichocarpa] |
| GenBank | ABK96132.1 | 0 | 1 | 384 | 1 | 388 | unknown [Populus trichocarpa] |
| RefSeq | XP_002277576.1 | 0 | 1 | 384 | 1 | 373 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002309435.1 | 0 | 56 | 384 | 4 | 332 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002323433.1 | 0 | 56 | 384 | 4 | 332 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 8e-38 | 63 | 293 | 15 | 270 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 8e-38 | 63 | 293 | 15 | 270 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1vbl_A | 1e-24 | 130 | 291 | 130 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3zsc_A | 1e-23 | 78 | 365 | 19 | 323 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 3vmw_A | 1e-21 | 135 | 292 | 82 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DY275282 | 332 | 54 | 383 | 0 |
| DY289690 | 312 | 49 | 356 | 0 |
| DW066041 | 301 | 78 | 378 | 0 |
| JG177860 | 307 | 74 | 380 | 0 |
| DY978143 | 287 | 48 | 334 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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