Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.A01315.1 |
Family | GH28 |
Protein Properties | Length: 457 Molecular Weight: 48747.3 Isoelectric Point: 5.1777 |
Chromosome | Chromosome/Scaffold: 1 Start: 21200153 End: 21203653 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 72 | 420 | 0 |
DKGGAQLYVPPGRWLTGSFNLTSHLTLFLERGATVLASQDPSHWDIVEPLPSYGRGIETPGRRYRSLINAYGLRDVVITGDNGTIDGQGSFWWDLFTSHS LNYSRPHLVEFVEAKHVVVSNITFLNAPAYNIHPVYCSDVHIQNVSISASPESPQTVGIVPDSSDNVCIEDCSISMGYDSISLKSGWDEYGISYSRPTSH VYIRRAYLQSYSGAAIAFGSEMSGGISDVHVNHVSIYSSSSGVEFRTTRGRGGYIEDITVSDVDMDDVHIAFGAKGHFGSHPDENFDPNALPVLRYITLK NVVGRSITVAGNFTGISESPFTSISLSNISLSLNSGSVTSWICSDVSGS |
Full Sequence |
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Protein Sequence Length: 457 Download |
MLGALLLLLA LSNAVSTRGG DSDRQCEYKL ALNLDPRPHS VSITEFGAVG DGKTLNTVAF 60 QNAIFYLKSF ADKGGAQLYV PPGRWLTGSF NLTSHLTLFL ERGATVLASQ DPSHWDIVEP 120 LPSYGRGIET PGRRYRSLIN AYGLRDVVIT GDNGTIDGQG SFWWDLFTSH SLNYSRPHLV 180 EFVEAKHVVV SNITFLNAPA YNIHPVYCSD VHIQNVSISA SPESPQTVGI VPDSSDNVCI 240 EDCSISMGYD SISLKSGWDE YGISYSRPTS HVYIRRAYLQ SYSGAAIAFG SEMSGGISDV 300 HVNHVSIYSS SSGVEFRTTR GRGGYIEDIT VSDVDMDDVH IAFGAKGHFG SHPDENFDPN 360 ALPVLRYITL KNVVGRSITV AGNFTGISES PFTSISLSNI SLSLNSGSVT SWICSDVSGS 420 SSSVLPEPCP ELAGSSSNSS SAGISSITAI GNSAAL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 6.0e-15 | 39 | 318 | 295 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 1.0e-20 | 39 | 339 | 305 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 4.0e-22 | 146 | 339 | 199 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 2.0e-22 | 38 | 339 | 320 | + polygalacturonase ADPG | ||
COG5434 | PGU1 | 9.0e-47 | 41 | 339 | 321 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI22951.1 | 0 | 12 | 430 | 12 | 428 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002273305.1 | 0 | 12 | 430 | 14 | 430 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002314352.1 | 0 | 14 | 438 | 14 | 435 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002328589.1 | 0 | 14 | 436 | 16 | 435 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516982.1 | 0 | 12 | 456 | 12 | 454 | Polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 4e-33 | 39 | 399 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 4e-33 | 39 | 399 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 4e-33 | 39 | 399 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 4e-33 | 39 | 399 | 26 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 2uvf_B | 0.00000000000001 | 37 | 373 | 153 | 527 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |