| Basic Information | |
|---|---|
| Species | Eucalyptus grandis |
| Cazyme ID | Eucgr.A01566.1 |
| Family | GT30 |
| Protein Properties | Length: 435 Molecular Weight: 48259.5 Isoelectric Point: 9.638 |
| Chromosome | Chromosome/Scaffold: 1 Start: 24610116 End: 24615860 |
| Description | KDO transferase A |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GT30 | 34 | 213 | 0 |
| RWAERLGRASLPRPPGPLLWFHAVSLGEAMAAIPVIKHCLQKRPEVNILLTTAKMSAFEVLEDQLPSGVVHQLAPLDTPAAINAFFGYWKPNAIMIVESE LWPNLIVGASENGVALALLNARMSAKSFERWSRPFLLPLMSLMLSKFSLIIPLSNVQAIHFQLLQAPPLVINFSGDLKYA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 435 Download |
| MAYRAYRALT SGLSPLLRLH LQWRAARGLD PPLRWAERLG RASLPRPPGP LLWFHAVSLG 60 EAMAAIPVIK HCLQKRPEVN ILLTTAKMSA FEVLEDQLPS GVVHQLAPLD TPAAINAFFG 120 YWKPNAIMIV ESELWPNLIV GASENGVALA LLNARMSAKS FERWSRPFLL PLMSLMLSKF 180 SLIIPLSNVQ AIHFQLLQAP PLVINFSGDL KYAVGECYSS REGVRFEGLK AQLAHKKVWM 240 ASSIHRGEEE VMLGIHQHLM QMHHDVVTII VPRYPEHGRE IYQELKKGGH NVSLRSQHEK 300 LEPGTNIYIV DTLGELRHLY RLTPVAVIGG SFVPGLAGHN MSEAAAAGCA ILTGLHVGHF 360 SHMVFQMQKV NPLSVLQVSG RDELVRVIHK LFTDAQVLKE HQVAARQAFN ALSGGVVGKV 420 WNLIEFHVLR QCLC* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam04413 | Glycos_transf_N | 3.0e-53 | 32 | 214 | 185 | + 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase). Members of this family transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Members of the family transfer UDP, ADP, GDP or CMP linked sugars. The Glycos_transf_N region is flanked at the N-terminus by a signal peptide and at the C-terminus by Glycos_transf_1 (pfam00534). The eukaryotic glycogen synthases may be distant members of this bacterial family. | ||
| COG1519 | KdtA | 2.0e-97 | 4 | 428 | 427 | + 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane] | ||
| PRK05749 | PRK05749 | 2.0e-99 | 1 | 425 | 428 | + 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005529 | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah] |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016740 | transferase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABE80128.2 | 0 | 2 | 410 | 7 | 416 | Three-deoxy-D-manno-octulosonic-acid transferase, N-terminal [Medicago truncatula] |
| EMBL | CBI30224.1 | 0 | 1 | 377 | 8 | 385 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002277784.1 | 0 | 3 | 434 | 10 | 441 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002322900.1 | 0 | 1 | 433 | 10 | 442 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002528642.1 | 0 | 3 | 429 | 14 | 440 | 3-deoxy-d-manno-octulosonic-acid transferase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2xcu_D | 8e-25 | 20 | 399 | 21 | 351 | A Chain A, Crystal Structure Of Chondroitin Polymerase From Escherichia Coli Strain K4 (K4cp) Complexed With Udp-Glcua And Udp |
| PDB | 2xcu_C | 8e-25 | 20 | 399 | 21 | 351 | A Chain A, Crystal Structure Of Chondroitin Polymerase From Escherichia Coli Strain K4 (K4cp) Complexed With Udp-Glcua And Udp |
| PDB | 2xcu_B | 8e-25 | 20 | 399 | 21 | 351 | A Chain A, Crystal Structure Of Chondroitin Polymerase From Escherichia Coli Strain K4 (K4cp) Complexed With Udp-Glcua And Udp |
| PDB | 2xcu_A | 8e-25 | 20 | 399 | 21 | 351 | A Chain A, Crystal Structure Of Chondroitin Polymerase From Escherichia Coli Strain K4 (K4cp) Complexed With Udp-Glcua And Udp |
| PDB | 2xci_D | 8e-25 | 20 | 399 | 21 | 351 | A Chain A, Membrane-Embedded Monofunctional Glycosyltransferase Waaa Of Aquifex Aeolicus, Substrate-Free Form |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
 | ||||
| Hit | Length | Start | End | EValue |
| DY279419 | 400 | 22 | 415 | 0 |
| DY266328 | 379 | 1 | 376 | 0 |
| FC917851 | 313 | 22 | 332 | 0 |
| DY288817 | 405 | 1 | 402 | 0 |
| DT556002 | 310 | 8 | 308 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
| Phylogeny |
|---|
 |