Basic Information | |
---|---|
Species | Eucalyptus grandis |
Cazyme ID | Eucgr.A02373.1 |
Family | GH28 |
Protein Properties | Length: 378 Molecular Weight: 40124.5 Isoelectric Point: 4.5048 |
Chromosome | Chromosome/Scaffold: 1 Start: 34500741 End: 34504102 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 35 | 365 | 0 |
EEACSATGAVLVVPEKNYLLGPITFSGPCRDNITFQINGTIRASDDRSAYDGDRRHWIMFDGVKNLVVQGGGTFDGNGLIWWQNSCKINKALPCKDAPTA LTFYNCENLITRNLKIQNAQQIHVSFDKCSDVQAADLQVIAPGSSPNTDGIHVTGTQNIEISSSIIGTGDDCISIVDGSQNVQAMDITCGPGHGISIGSL GSGNSEAHVSGVTVNRANFSGTTNGVRIKTWQGGSGSASNIKFQNIEMHDVSNPIIIDQNYCDQDEPCEQQRSAVEVRNVMYQNIKGTSASDVAIEFNCS QSVPCKGIVLQNIDMQKTGGGSATASCNNID |
Full Sequence |
---|
Protein Sequence Length: 378 Download |
SLLLSSPATT FDVNDFGARG DGSPDDVQAF QKAWEEACSA TGAVLVVPEK NYLLGPITFS 60 GPCRDNITFQ INGTIRASDD RSAYDGDRRH WIMFDGVKNL VVQGGGTFDG NGLIWWQNSC 120 KINKALPCKD APTALTFYNC ENLITRNLKI QNAQQIHVSF DKCSDVQAAD LQVIAPGSSP 180 NTDGIHVTGT QNIEISSSII GTGDDCISIV DGSQNVQAMD ITCGPGHGIS IGSLGSGNSE 240 AHVSGVTVNR ANFSGTTNGV RIKTWQGGSG SASNIKFQNI EMHDVSNPII IDQNYCDQDE 300 PCEQQRSAVE VRNVMYQNIK GTSASDVAIE FNCSQSVPCK GIVLQNIDMQ KTGGGSATAS 360 CNNIDPEYIG TVSPHCS* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 8.0e-82 | 5 | 374 | 372 | + polygalacturonase | ||
PLN02188 | PLN02188 | 2.0e-106 | 1 | 374 | 381 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 8.0e-112 | 38 | 364 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 2.0e-128 | 11 | 374 | 367 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-149 | 9 | 377 | 373 | + polygalacturonase ADPG |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF71160.1 | 0 | 8 | 376 | 87 | 455 | AF152758_1 polygalacturonase A [Actinidia chinensis] |
Swiss-Prot | P35336 | 0 | 8 | 376 | 87 | 455 | PGLR_ACTDE RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
RefSeq | XP_002282772.1 | 0 | 10 | 377 | 75 | 442 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002308956.1 | 0 | 5 | 376 | 71 | 442 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529616.1 | 0 | 5 | 376 | 102 | 473 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 5e-22 | 102 | 299 | 113 | 318 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 2e-18 | 89 | 364 | 56 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-18 | 89 | 364 | 56 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-18 | 89 | 364 | 56 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-18 | 89 | 364 | 56 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
EE093402 | 256 | 84 | 339 | 0 |
EE091344 | 244 | 107 | 350 | 0 |
EH769878 | 255 | 42 | 296 | 0 |
EH756941 | 253 | 124 | 376 | 0 |
EH769463 | 254 | 17 | 268 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|