Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.A02740.1 |
Family | GH28 |
Protein Properties | Length: 459 Molecular Weight: 49963.1 Isoelectric Point: 6.3079 |
Chromosome | Chromosome/Scaffold: 1 Start: 37950776 End: 37953062 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 70 | 415 | 0 |
GGAQLVVPAGKWLTGSFNLTSHFTLYLDGNATILASQNESEWPQVAILPSYGAGRNAHGRRFSSLIFGINLTDVVITGNNGTIHGQGAYWWDKFRKEELN WTLPYLIEIMYSNWVQISNLTLVDSPSWFVHPIYSSNILVQRLTILAPVDSPSTDGVDPDSCTNVRIEDCYIVSGDDCVAIKSGWNQYGIAFGMPTQHVI IRRITCTSPRGAAIALGSQMSGGIQDIRAENVVPINTQSGIRIKTAPGRGGYIKDIFMRSMIMKTMDYMFWTSGGFNFHPDPGYDPKALPVIQGINYRDM VAENVTYSARLEGIKGDPFTGICISNVHIGLSPKPEKIQWNCTDIA |
Full Sequence |
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Protein Sequence Length: 459 Download |
MTVRLPGRSA LLLLLLSLLS ARGGESYPAI NCRKHAASLV DFGGVGDGRT SNTEAFRRAV 60 ANLSEYALDG GAQLVVPAGK WLTGSFNLTS HFTLYLDGNA TILASQNESE WPQVAILPSY 120 GAGRNAHGRR FSSLIFGINL TDVVITGNNG TIHGQGAYWW DKFRKEELNW TLPYLIEIMY 180 SNWVQISNLT LVDSPSWFVH PIYSSNILVQ RLTILAPVDS PSTDGVDPDS CTNVRIEDCY 240 IVSGDDCVAI KSGWNQYGIA FGMPTQHVII RRITCTSPRG AAIALGSQMS GGIQDIRAEN 300 VVPINTQSGI RIKTAPGRGG YIKDIFMRSM IMKTMDYMFW TSGGFNFHPD PGYDPKALPV 360 IQGINYRDMV AENVTYSARL EGIKGDPFTG ICISNVHIGL SPKPEKIQWN CTDIAGVTSN 420 VTPVACDLLP VKEPAIDCPF PKDTLPIEDV ELKTCPVP* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 1.0e-18 | 41 | 333 | 305 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 3.0e-21 | 38 | 335 | 309 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 3.0e-25 | 35 | 336 | 313 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 2.0e-26 | 72 | 414 | 358 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 1.0e-51 | 28 | 333 | 335 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACU17976.1 | 0 | 2 | 455 | 18 | 469 | unknown [Glycine max] |
RefSeq | XP_002273177.1 | 0 | 14 | 455 | 10 | 450 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002327490.1 | 0 | 10 | 455 | 3 | 448 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002509850.1 | 0 | 27 | 455 | 43 | 473 | polygalacturonase, putative [Ricinus communis] |
RefSeq | XP_002513653.1 | 0 | 12 | 455 | 18 | 469 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 35 | 398 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 35 | 398 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 35 | 398 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 35 | 398 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.000000000000007 | 53 | 367 | 26 | 349 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |