Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.A02742.1 |
Family | GH28 |
Protein Properties | Length: 465 Molecular Weight: 50519.7 Isoelectric Point: 5.7195 |
Chromosome | Chromosome/Scaffold: 1 Start: 37956241 End: 37958596 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 69 | 417 | 0 |
TDGGAQLVVPAGKWLTGSFNLTSHFTLYLDGNATILASQDESEWPQVAILLSYGRGRDAPGGRFSSLISGTNLTDVVITGNNGTIDGQGAYWWDKFKKEE LNLTRPYLIEFLYSDQVQIAYITLVDSPSWFVHPIYSSDIFVQGVTILAPIDSPNTDGINPDSSSNVRIEDNYIVSGDDCIAIKSGWDQYGIKFGKPTEH VSIRRLTCISPDSAAIALGSEMSGGIQDVRAETIVAINTQSGVRIKTAPGRGGYVKDIFVKGMIMKTMKYAFWMTGSYNSHPDTGYDPKALPVIQGINYR DMVAENVTYSAKLDGIKGDPFTGICISNVQIELSKNPKKLQWNCTDIEG |
Full Sequence |
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Protein Sequence Length: 465 Download |
MIMRLPVLLA LLLLLLSSLL SVRGGESYAA ISCRKHTKSL VDFGGVGDGK TSNTEAFRRA 60 IANLSGYATD GGAQLVVPAG KWLTGSFNLT SHFTLYLDGN ATILASQDES EWPQVAILLS 120 YGRGRDAPGG RFSSLISGTN LTDVVITGNN GTIDGQGAYW WDKFKKEELN LTRPYLIEFL 180 YSDQVQIAYI TLVDSPSWFV HPIYSSDIFV QGVTILAPID SPNTDGINPD SSSNVRIEDN 240 YIVSGDDCIA IKSGWDQYGI KFGKPTEHVS IRRLTCISPD SAAIALGSEM SGGIQDVRAE 300 TIVAINTQSG VRIKTAPGRG GYVKDIFVKG MIMKTMKYAF WMTGSYNSHP DTGYDPKALP 360 VIQGINYRDM VAENVTYSAK LDGIKGDPFT GICISNVQIE LSKNPKKLQW NCTDIEGVTS 420 NVTPVACDLL PKKEPAIDCP FPTEKLPIED VLFKMCPVPK NYAH* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 2.0e-22 | 42 | 427 | 399 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 5.0e-26 | 37 | 400 | 375 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 2.0e-27 | 40 | 424 | 401 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 7.0e-33 | 73 | 415 | 358 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 4.0e-54 | 39 | 334 | 320 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD32865.1 | 0 | 28 | 458 | 31 | 462 | Glycoside hydrolase, family 28 [Medicago truncatula] |
GenBank | ACU17976.1 | 0 | 28 | 456 | 43 | 469 | unknown [Glycine max] |
RefSeq | XP_002273177.1 | 0 | 6 | 456 | 3 | 450 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002327490.1 | 0 | 12 | 456 | 4 | 448 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002513653.1 | 0 | 12 | 456 | 18 | 469 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 39 | 421 | 29 | 432 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 39 | 421 | 29 | 432 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 39 | 421 | 29 | 432 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 39 | 421 | 29 | 432 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 2uvf_B | 6e-17 | 20 | 434 | 139 | 576 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |