Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.B00168.1 |
Family | PL1 |
Protein Properties | Length: 485 Molecular Weight: 53406.1 Isoelectric Point: 8.364 |
Chromosome | Chromosome/Scaffold: 2 Start: 2613423 End: 2615887 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 197 | 404 | 0 |
VIQDEPLWIIFQRDMSIQLKEELIMNSFKTLDGRGASVHIAGGPCITVQFVTNIIIHGLHIHDCKQGGNANVRSSPRHYGWRTISDGDGVSIFGGSHIWV DHCSLSNCKDGLIDAIEGSTAITISNNYMTHHDKVMLLGHSDSYTRDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINS QGNRFTAP |
Full Sequence |
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Protein Sequence Length: 485 Download |
MRASARKQRT KPILGRVLSE PRTAEDEREN ANARTSNFSK FPPQTHALSL SLSTPAFFLI 60 RPEEEKATEK EDKRSKMAVA MPTLSLLLLV FFLAAWPIFS SPVQDPEGVV HEVHQSIANA 120 TRNRRGLGYL SCGTGNPIDD CWRCDPNWEK NRQRLADCAI GFGKNAVGGR DGRIYVVTDS 180 GDDDPVNPKP GTIRHAVIQD EPLWIIFQRD MSIQLKEELI MNSFKTLDGR GASVHIAGGP 240 CITVQFVTNI IIHGLHIHDC KQGGNANVRS SPRHYGWRTI SDGDGVSIFG GSHIWVDHCS 300 LSNCKDGLID AIEGSTAITI SNNYMTHHDK VMLLGHSDSY TRDKNMQVTI AFNHFGEGLV 360 QRMPRCRHGY FHVVNNDYTH WEMYAIGGSA DPTINSQGNR FTAPDKRFSK EVTKHEVAPQ 420 SEWRNWNWRS EGDLLLNGAF FTPSGAGASS SYAKASSLGA RPSSLVGTIT GNAGTLGCKK 480 GSRC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam13229 | Beta_helix | 0.009 | 238 | 323 | 96 | + Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases. | ||
COG3866 | PelB | 3.0e-27 | 223 | 401 | 193 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-74 | 216 | 401 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-83 | 210 | 405 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAQ84042.1 | 0 | 103 | 484 | 38 | 418 | pectate lyase [Malus x domestica] |
GenBank | ABV32549.1 | 0 | 98 | 484 | 27 | 413 | pectase lyase [Prunus persica] |
GenBank | ADB90476.1 | 0 | 104 | 484 | 34 | 411 | pectate lyase [Gossypium raimondii] |
DDBJ | BAE48664.1 | 0 | 98 | 484 | 27 | 413 | Pectate lyase [Prunus mume] |
RefSeq | XP_002322215.1 | 0 | 98 | 484 | 20 | 403 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 136 | 476 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 136 | 476 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 1e-16 | 205 | 401 | 50 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_B | 0.000000000000004 | 290 | 475 | 151 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_A | 0.000000000000004 | 290 | 475 | 151 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |