y
Basic Information | |
---|---|
Species | Eucalyptus grandis |
Cazyme ID | Eucgr.B01575.1 |
Family | GH28 |
Protein Properties | Length: 344 Molecular Weight: 36693.1 Isoelectric Point: 8.5513 |
Chromosome | Chromosome/Scaffold: 2 Start: 26213786 End: 26215566 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 2 | 321 | 0 |
VIPQGRFLVGPLVFTGPCVNKEPIVVQIQGTLLSASPDELEDAPMDVDTWIQFYELNGLIVIGGGTLDGQGAAFWSHDLGSQGPGLPVNLMFQKVNNTLV RKLSSVNPKGFHISVVQCNNIRLYNLRITAPADSPNTDGIHISRSNLVKIARSEIATGDDCIGMIQGSTAISIKNVKCGPGHGISIGSLGKYENEADVRG VVVKNCTLSNTDNGLRIKTMRGPKATASRASSIIFQDIIMRDVKNPIIIDQEYNAHGKNQANPSPVKISDVHFINVRGTSTSPVAVQVACSRIVPCQNLK FYNINLDYVGKPGKALPPTC |
Full Sequence |
---|
Protein Sequence Length: 344 Download |
MVIPQGRFLV GPLVFTGPCV NKEPIVVQIQ GTLLSASPDE LEDAPMDVDT WIQFYELNGL 60 IVIGGGTLDG QGAAFWSHDL GSQGPGLPVN LMFQKVNNTL VRKLSSVNPK GFHISVVQCN 120 NIRLYNLRIT APADSPNTDG IHISRSNLVK IARSEIATGD DCIGMIQGST AISIKNVKCG 180 PGHGISIGSL GKYENEADVR GVVVKNCTLS NTDNGLRIKT MRGPKATASR ASSIIFQDII 240 MRDVKNPIII DQEYNAHGKN QANPSPVKIS DVHFINVRGT STSPVAVQVA CSRIVPCQNL 300 KFYNINLDYV GKPGKALPPT CTSTCTFATG LSYGGIQKPP ACH* 360 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 4.0e-66 | 1 | 308 | 312 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 2.0e-71 | 1 | 323 | 330 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 5.0e-83 | 1 | 342 | 357 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 5.0e-87 | 1 | 313 | 315 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 1.0e-113 | 1 | 343 | 347 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002314372.1 | 0 | 1 | 343 | 84 | 410 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002314373.1 | 0 | 1 | 311 | 19 | 319 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002315493.1 | 0 | 1 | 343 | 49 | 375 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002334010.1 | 0 | 1 | 343 | 82 | 408 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516967.1 | 0 | 1 | 343 | 87 | 412 | Exopolygalacturonase clone GBGE184 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 8e-18 | 65 | 307 | 77 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 8e-18 | 65 | 307 | 77 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 8e-18 | 65 | 307 | 77 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 8e-18 | 65 | 307 | 77 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 8e-18 | 65 | 307 | 77 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
JG075520 | 265 | 84 | 343 | 0 |
CO121523 | 276 | 51 | 326 | 0 |
CO125075 | 275 | 51 | 325 | 0 |
JG075143 | 257 | 87 | 343 | 0 |
DW091705 | 308 | 1 | 306 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|