Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.B01667.1 |
Family | GH28 |
Protein Properties | Length: 650 Molecular Weight: 69996.5 Isoelectric Point: 6.0004 |
Chromosome | Chromosome/Scaffold: 2 Start: 29832495 End: 29835908 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 259 | 604 | 0 |
ASCNVEASTMVVPANHVFLVGPISFVGEHCQENIILQLDGTVVAPTDPQAWGGEHWLHFDKLSRFTLQGSGTVDGRGSVWWRRSRSEDLNDDLLDVDNDA SDGMDSEDADTQAKEELSSMPRNKPTAMRFDHCLNVTFSGIKIQNSPNFHLTFDHSVGVLVRDMSISSPGDSPNTDGIHLGNSQDVTIHDATLACGDDCI SIVSGCSNIHIHDVHCGPGHGISIGSLGKDHSKACVHNITVEDVDLQGTTNGVRIKSWQGGSGSVYGVKFSNIRVSEVRWPIIIDQYYCDHATCTNQSSA VAVRDVTYEHVSGTYTERSVDLACSDSVPCEDITLSAIDLRPSSQK |
Full Sequence |
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Protein Sequence Length: 650 Download |
MGKFSFKSLM AAFAVAIFVW CISCCEVCNA REVTDRRSYA ATAAADSTTR SSLWLWRGRW 60 RIPHFPLPPF PFYRPWPYLP LPRWPYLPRP RPRPVDPRHD PHRQGPHHGP PKQIPPPTPM 120 VDPTLRPPVS VPPVAEPTPS PPQAPIANPT PPTSLTPPAS PTPPAVRTPP DSPTSPPSLM 180 PPVKPTPPVE PTPPASPASP APSAVPTPLA SPTLPVPTPR APPTPSVPSN STTFNVLDFG 240 ANGNGNTDDT KAFQDAWAAS CNVEASTMVV PANHVFLVGP ISFVGEHCQE NIILQLDGTV 300 VAPTDPQAWG GEHWLHFDKL SRFTLQGSGT VDGRGSVWWR RSRSEDLNDD LLDVDNDASD 360 GMDSEDADTQ AKEELSSMPR NKPTAMRFDH CLNVTFSGIK IQNSPNFHLT FDHSVGVLVR 420 DMSISSPGDS PNTDGIHLGN SQDVTIHDAT LACGDDCISI VSGCSNIHIH DVHCGPGHGI 480 SIGSLGKDHS KACVHNITVE DVDLQGTTNG VRIKSWQGGS GSVYGVKFSN IRVSEVRWPI 540 IIDQYYCDHA TCTNQSSAVA VRDVTYEHVS GTYTERSVDL ACSDSVPCED ITLSAIDLRP 600 SSQKPPSHDD GPFCWQTFGQ LTTPSSPLID CVQIGRRSSN GIGLGQDSC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 6.0e-67 | 234 | 649 | 424 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 3.0e-67 | 234 | 598 | 372 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 8.0e-78 | 262 | 598 | 338 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 5.0e-78 | 235 | 599 | 368 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 6.0e-103 | 234 | 627 | 400 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAL31197.1 | 0 | 229 | 649 | 52 | 473 | At1g60590/F8A5_12 [Arabidopsis thaliana] |
GenBank | ABK95830.1 | 0 | 230 | 649 | 97 | 516 | unknown [Populus trichocarpa] |
RefSeq | NP_564758.2 | 0 | 230 | 649 | 119 | 539 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002266600.1 | 0 | 217 | 649 | 73 | 505 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311773.1 | 0 | 231 | 649 | 99 | 517 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-27 | 325 | 546 | 113 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 3e-22 | 297 | 598 | 41 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 3e-22 | 297 | 598 | 41 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 3e-22 | 297 | 598 | 41 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 3e-22 | 297 | 598 | 41 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |