Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.B03312.1 |
Family | GH28 |
Protein Properties | Length: 522 Molecular Weight: 56634.3 Isoelectric Point: 7.9272 |
Chromosome | Chromosome/Scaffold: 2 Start: 58035146 End: 58040466 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 129 | 476 | 0 |
AACKVEASMMIIPAKYVFFVGPISFSGPFCQANILVQVDGTIVAPTENKAWGKGLLQWLEFTKLRGITIQGQGTIDGRGSVWWEDYPFDEPIDDETQLLI PLNSTVERSPPMPVRNELGAKMPSIKPTALRFYGSFNVTVTGITIRNSPQFHLKFDNCMGVLVHDMSVSSPGNSPNTDGIHLQNSKDVLIHSTDLACGDD CISIQTGCSNVYIHNVNCGPGHGISIGSLGRDHTKACVSNITVRDVNIHNTMTGVRIKTWQGGSGSVQGVMFSNVQVSEVQFPIIIDQYYCDKSTCMNQS SAVALSGITYERIRGTYTVRPVHFACSDSLPCVDVTLTAIQLKPVQEQ |
Full Sequence |
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Protein Sequence Length: 522 Download |
MEGLRFRSIT FMLFIALLAW SSSLEMCNAR RGKHWRHSRA ASASLLKKKT KSHGSSHHNH 60 HGGSKSPTAP SHKSPSLPPS PKPVEETPPS PPQKGSSGGR SATFNVLDFG AKGDGSTDDT 120 KAFEDAWAAA CKVEASMMII PAKYVFFVGP ISFSGPFCQA NILVQVDGTI VAPTENKAWG 180 KGLLQWLEFT KLRGITIQGQ GTIDGRGSVW WEDYPFDEPI DDETQLLIPL NSTVERSPPM 240 PVRNELGAKM PSIKPTALRF YGSFNVTVTG ITIRNSPQFH LKFDNCMGVL VHDMSVSSPG 300 NSPNTDGIHL QNSKDVLIHS TDLACGDDCI SIQTGCSNVY IHNVNCGPGH GISIGSLGRD 360 HTKACVSNIT VRDVNIHNTM TGVRIKTWQG GSGSVQGVMF SNVQVSEVQF PIIIDQYYCD 420 KSTCMNQSSA VALSGITYER IRGTYTVRPV HFACSDSLPC VDVTLTAIQL KPVQEQYHLY 480 NPFCWQTFGL LSTPTVPPVD CLQIGKPSKS RTQSGLDSCS D* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 4.0e-73 | 104 | 470 | 372 | + polygalacturonase | ||
PLN02188 | PLN02188 | 1.0e-73 | 103 | 471 | 374 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 3.0e-76 | 135 | 470 | 337 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 4.0e-81 | 102 | 471 | 374 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 9.0e-98 | 104 | 498 | 401 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK95830.1 | 0 | 1 | 519 | 4 | 516 | unknown [Populus trichocarpa] |
RefSeq | NP_564758.2 | 0 | 2 | 519 | 5 | 539 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002266600.1 | 0 | 1 | 519 | 1 | 505 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311773.1 | 0 | 1 | 519 | 4 | 517 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525361.1 | 0 | 1 | 519 | 1 | 519 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 5e-24 | 145 | 421 | 51 | 317 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 2e-23 | 91 | 489 | 8 | 355 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 3jur_D | 8e-22 | 105 | 418 | 29 | 362 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 8e-22 | 105 | 418 | 29 | 362 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 8e-22 | 105 | 418 | 29 | 362 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |