Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.B03312.2 |
Family | GH28 |
Protein Properties | Length: 386 Molecular Weight: 42116 Isoelectric Point: 6.4914 |
Chromosome | Chromosome/Scaffold: 2 Start: 58036782 End: 58040466 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 2 | 340 | 0 |
MIIPAKYVFFVGPISFSGPFCQANILVQVDGTIVAPTENKAWGKGLLQWLEFTKLRGITIQGQGTIDGRGSVWWEDYPFDEPIDDETQLLIPLNSTVERS PPMPVRNELGAKMPSIKPTALRFYGSFNVTVTGITIRNSPQFHLKFDNCMGVLVHDMSVSSPGNSPNTDGIHLQNSKDVLIHSTDLACGDDCISIQTGCS NVYIHNVNCGPGHGISIGSLGRDHTKACVSNITVRDVNIHNTMTGVRIKTWQGGSGSVQGVMFSNVQVSEVQFPIIIDQYYCDKSTCMNQSSAVALSGIT YERIRGTYTVRPVHFACSDSLPCVDVTLTAIQLKPVQEQ |
Full Sequence |
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Protein Sequence Length: 386 Download |
MMIIPAKYVF FVGPISFSGP FCQANILVQV DGTIVAPTEN KAWGKGLLQW LEFTKLRGIT 60 IQGQGTIDGR GSVWWEDYPF DEPIDDETQL LIPLNSTVER SPPMPVRNEL GAKMPSIKPT 120 ALRFYGSFNV TVTGITIRNS PQFHLKFDNC MGVLVHDMSV SSPGNSPNTD GIHLQNSKDV 180 LIHSTDLACG DDCISIQTGC SNVYIHNVNC GPGHGISIGS LGRDHTKACV SNITVRDVNI 240 HNTMTGVRIK TWQGGSGSVQ GVMFSNVQVS EVQFPIIIDQ YYCDKSTCMN QSSAVALSGI 300 TYERIRGTYT VRPVHFACSD SLPCVDVTLT AIQLKPVQEQ YHLYNPFCWQ TFGLLSTPTV 360 PPVDCLQIGK PSKSRTQSGL DSCSD* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 1.0e-59 | 2 | 335 | 339 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 7.0e-61 | 2 | 383 | 388 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 3.0e-67 | 2 | 335 | 337 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 1.0e-75 | 2 | 334 | 334 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 3.0e-84 | 2 | 362 | 365 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK95830.1 | 0 | 2 | 383 | 135 | 516 | unknown [Populus trichocarpa] |
EMBL | CAN65317.1 | 0 | 2 | 383 | 7 | 388 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311773.1 | 0 | 2 | 383 | 136 | 517 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002314612.1 | 0 | 2 | 383 | 1 | 382 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525361.1 | 0 | 2 | 383 | 138 | 519 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-24 | 44 | 285 | 96 | 317 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 7e-20 | 59 | 334 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 7e-20 | 59 | 334 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 7e-20 | 59 | 334 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 7e-20 | 59 | 334 | 72 | 318 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
ES800057 | 348 | 6 | 352 | 0 |
FE695613 | 286 | 73 | 358 | 0 |
EV525679 | 276 | 95 | 370 | 0 |
EY116434 | 289 | 72 | 360 | 0 |
EX073104 | 285 | 1 | 284 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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