Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.C00786.1 |
Family | GH28 |
Protein Properties | Length: 510 Molecular Weight: 56294.3 Isoelectric Point: 9.3105 |
Chromosome | Chromosome/Scaffold: 3 Start: 13072207 End: 13077432 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 123 | 470 | 0 |
RGGGQLNVPPGRWLTAPFNLTSHMTLFLAEGAVILAIEDQKYWPLMPPLPSYGYGREHPGPRYGSLIHGQNLKDIVITGHNGTINGQGQSWWKKYRQKLL NHTRGPLVQIMWSSHIVISNITLRDSPFWTLHPYDCKNVTIKNVTILAPIFEAPNTDGIDPDSCEDMVIEDCYISVGDDAIAIKSGWDQYGISYKRPSTN ILIRNLVVRSMVSAGISIGSEMSGGVSNVTVENLLVWDSRRAVRIKTAPGRGGYVQDITYRNITFENVRVGIVIKTDYNEHPDEGYDRKAFPILQRISFI GVHGQGVRVPVRIHGSEEIPVRNVTFRDMSVGLTYKKKHIFQCAFVQG |
Full Sequence |
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Protein Sequence Length: 510 Download |
MVETLGLARF GHHRLDLRRW GAAPAFVSSH KTLLSVVWIA ALATVFLWQR GAVVGVGGGG 60 GGGGGGFSIF RWRSAEWEAG RAVPRLRPVA FNLTDFGGVG DGVTVNTEAF ERAVRAISKL 120 GKRGGGQLNV PPGRWLTAPF NLTSHMTLFL AEGAVILAIE DQKYWPLMPP LPSYGYGREH 180 PGPRYGSLIH GQNLKDIVIT GHNGTINGQG QSWWKKYRQK LLNHTRGPLV QIMWSSHIVI 240 SNITLRDSPF WTLHPYDCKN VTIKNVTILA PIFEAPNTDG IDPDSCEDMV IEDCYISVGD 300 DAIAIKSGWD QYGISYKRPS TNILIRNLVV RSMVSAGISI GSEMSGGVSN VTVENLLVWD 360 SRRAVRIKTA PGRGGYVQDI TYRNITFENV RVGIVIKTDY NEHPDEGYDR KAFPILQRIS 420 FIGVHGQGVR VPVRIHGSEE IPVRNVTFRD MSVGLTYKKK HIFQCAFVQG RVIGSIFPAP 480 CENLDLYDEQ ENLAKRSASQ NITDIDYDI* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 6.0e-23 | 201 | 400 | 207 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-25 | 183 | 481 | 310 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 1.0e-30 | 193 | 453 | 270 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 1.0e-41 | 189 | 460 | 278 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 5.0e-62 | 90 | 445 | 395 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN69988.1 | 0 | 1 | 509 | 1 | 509 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002277239.1 | 0 | 1 | 509 | 1 | 493 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002324728.1 | 0 | 1 | 509 | 1 | 495 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002326133.1 | 0 | 1 | 509 | 1 | 495 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516244.1 | 0 | 1 | 509 | 2 | 494 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 84 | 450 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 84 | 450 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 84 | 450 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 84 | 450 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 1e-18 | 135 | 448 | 52 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO778855 | 464 | 1 | 464 | 0 |
FN769574 | 320 | 165 | 484 | 0 |
FE707848 | 287 | 106 | 392 | 0 |
CX102356 | 331 | 146 | 476 | 0 |
CX102356 | 26 | 476 | 501 | 2.8 |
Sequence Alignments (This image is cropped. Click for full image.) |
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