Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.C01172.1 |
Family | GH28 |
Protein Properties | Length: 215 Molecular Weight: 22863.7 Isoelectric Point: 7.7677 |
Chromosome | Chromosome/Scaffold: 3 Start: 18197107 End: 18199236 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 7 | 201 | 0 |
DTPGTSPNTDGIHIQSSQHVSIANAVIGTGDDCISIGDYTSNIYVSSVTCGPGHGVSIGSLGRRGNFVQVENIHVSNVQFKHTTNGARIKTWQVGKGYVR RITFEYLKFDSVKNPIIIDQNYCSIRGACKEMPTGVHISNVAYVGLSGTSSTDVAINLNCSRSVACTRIVLESIELMSANMDRQVTSSCLNAHGN |
Full Sequence |
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Protein Sequence Length: 215 Download |
MHFSGTDTPG TSPNTDGIHI QSSQHVSIAN AVIGTGDDCI SIGDYTSNIY VSSVTCGPGH 60 GVSIGSLGRR GNFVQVENIH VSNVQFKHTT NGARIKTWQV GKGYVRRITF EYLKFDSVKN 120 PIIIDQNYCS IRGACKEMPT GVHISNVAYV GLSGTSSTDV AINLNCSRSV ACTRIVLESI 180 ELMSANMDRQ VTSSCLNAHG NAIGVVRPDP CLQS* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02155 | PLN02155 | 1.0e-53 | 9 | 212 | 205 | + polygalacturonase | ||
PLN02218 | PLN02218 | 5.0e-55 | 9 | 208 | 200 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 3.0e-57 | 1 | 199 | 201 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 2.0e-61 | 9 | 211 | 205 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02793 | PLN02793 | 4.0e-62 | 8 | 214 | 207 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF61444.1 | 0 | 9 | 212 | 231 | 433 | AF138858_1 polygalacturonase [Solanum lycopersicum] |
EMBL | CBI36307.1 | 0 | 9 | 213 | 200 | 403 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_178131.1 | 0 | 8 | 212 | 132 | 336 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002266543.1 | 0 | 9 | 214 | 172 | 376 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002329026.1 | 0 | 1 | 212 | 114 | 322 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 0.000000000000004 | 8 | 184 | 194 | 363 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1hg8_A | 0.000000000000006 | 14 | 155 | 165 | 304 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
PDB | 1nhc_F | 0.00000000000003 | 14 | 160 | 152 | 296 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 0.00000000000003 | 14 | 160 | 152 | 296 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 0.00000000000003 | 14 | 160 | 152 | 296 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HS061555 | 124 | 92 | 215 | 0 |
HS061612 | 120 | 96 | 215 | 0 |
DT768232 | 215 | 9 | 212 | 0 |
DT746124 | 215 | 9 | 212 | 0 |
DT769246 | 215 | 9 | 212 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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