y
Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.C01750.1 |
Family | GH28 |
Protein Properties | Length: 347 Molecular Weight: 37701.4 Isoelectric Point: 6.6072 |
Chromosome | Chromosome/Scaffold: 3 Start: 29666220 End: 29668752 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 32 | 327 | 0 |
GNITAPAKIEEWKNCESQSWILFSKINGLKVTGEGTGYLDGRGQIWWNKAYKSSILFTTRSIGVTFYQIENLELSGLTHLDSPRVHIRLENCTGAKLTSL LIQAPDDSPNTDGIAIGSSSHIQIHDSTIRTGDDCIAIKGGTSFLDVNRVKCGPGHGISVGSLGYEGEYETVEEVNVRNCEFKSSDNGARIKTWQGGSGY VRGIHFENIVISDARNPIIIDQNYCDDQKTKCKMSSSSVVKVSNVTFRNVRGTSGNQPSIKLQCAGGVGCTNIVLDHVKLNPQEPGEKSYADCENV |
Full Sequence |
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Protein Sequence Length: 347 Download |
MGQLRQANFL GSTCPLRPAW PSKIYMGKLI LGNITAPAKI EEWKNCESQS WILFSKINGL 60 KVTGEGTGYL DGRGQIWWNK AYKSSILFTT RSIGVTFYQI ENLELSGLTH LDSPRVHIRL 120 ENCTGAKLTS LLIQAPDDSP NTDGIAIGSS SHIQIHDSTI RTGDDCIAIK GGTSFLDVNR 180 VKCGPGHGIS VGSLGYEGEY ETVEEVNVRN CEFKSSDNGA RIKTWQGGSG YVRGIHFENI 240 VISDARNPII IDQNYCDDQK TKCKMSSSSV VKVSNVTFRN VRGTSGNQPS IKLQCAGGVG 300 CTNIVLDHVK LNPQEPGEKS YADCENVVDG NFDDVDPQVS CRTSEG* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 2.0e-64 | 51 | 327 | 284 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02793 | PLN02793 | 4.0e-66 | 11 | 337 | 332 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 1.0e-69 | 30 | 327 | 300 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 2.0e-73 | 32 | 341 | 310 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 2.0e-74 | 30 | 327 | 298 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAY21049.1 | 0 | 5 | 346 | 70 | 400 | PGN [Glycine max] |
EMBL | CBI36306.1 | 0 | 3 | 311 | 163 | 463 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002266960.1 | 0 | 15 | 341 | 68 | 388 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002324855.1 | 0 | 15 | 346 | 77 | 398 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515526.1 | 0 | 30 | 341 | 91 | 391 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 3e-21 | 52 | 330 | 63 | 334 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 3e-21 | 52 | 330 | 63 | 334 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 3e-21 | 52 | 330 | 63 | 334 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 3e-21 | 52 | 330 | 63 | 334 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 3e-21 | 52 | 330 | 63 | 334 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CV536748 | 266 | 32 | 295 | 0 |
DR050772 | 291 | 30 | 311 | 0 |
EY474520 | 252 | 94 | 345 | 0 |
GT141262 | 238 | 108 | 345 | 0 |
GO013888 | 209 | 133 | 341 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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