Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.C02249.1 |
Family | GH28 |
Protein Properties | Length: 406 Molecular Weight: 43113.9 Isoelectric Point: 5.8031 |
Chromosome | Chromosome/Scaffold: 3 Start: 41614847 End: 41616822 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 68 | 393 | 0 |
EGGSERRLLVPLGTYMVWPVVLKGPCAGPITVTVEGVVKGPVDKSTFSLDHWITFQSVDGLLIDGGGTFDGQGQEAWSYNNCSKNSNCKLLPVSLRFNYV KNALISNITSVNSMFFHFVLFSCDALEFRHVRIVAPDESPNTDGIHIGHSSRITIADSVISTGDDCVSVGPGSKGVKVVGVQCGPGHGFSVGSLGKYPGE ADVSELSVSGCTMVGTQNGVRIKTWASPLESSAYNISFQDITMNNVSNPIIINQEYCPVGGCSKESGSNVQIKDVWFSKIQGTSASQLAVKIVCSPKVPC ANINLESIDLTYPGGHAESNCTYVNG |
Full Sequence |
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Protein Sequence Length: 406 Download |
MEMDSSSCFC KICLLLCSVS VLVLANGVPS IHAQPKVFDV KSFGAIADGQ TNDSKAFLDV 60 WTQTCHYEGG SERRLLVPLG TYMVWPVVLK GPCAGPITVT VEGVVKGPVD KSTFSLDHWI 120 TFQSVDGLLI DGGGTFDGQG QEAWSYNNCS KNSNCKLLPV SLRFNYVKNA LISNITSVNS 180 MFFHFVLFSC DALEFRHVRI VAPDESPNTD GIHIGHSSRI TIADSVISTG DDCVSVGPGS 240 KGVKVVGVQC GPGHGFSVGS LGKYPGEADV SELSVSGCTM VGTQNGVRIK TWASPLESSA 300 YNISFQDITM NNVSNPIIIN QEYCPVGGCS KESGSNVQIK DVWFSKIQGT SASQLAVKIV 360 CSPKVPCANI NLESIDLTYP GGHAESNCTY VNGESRGVQN PPSCI* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 6.0e-72 | 36 | 395 | 368 | + polygalacturonase | ||
PLN02155 | PLN02155 | 1.0e-76 | 37 | 405 | 372 | + polygalacturonase | ||
PLN02793 | PLN02793 | 2.0e-80 | 36 | 404 | 375 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 5.0e-82 | 75 | 404 | 330 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 1.0e-112 | 38 | 404 | 371 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAQ63000.1 | 0 | 38 | 405 | 62 | 432 | oil palm polygalacturonase allergen PEST643 [Elaeis guineensis] |
GenBank | ACN85327.1 | 0 | 14 | 405 | 4 | 405 | polygalacturonase precursor [Oryza brachyantha] |
RefSeq | XP_002273801.1 | 0 | 9 | 405 | 7 | 396 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002279959.1 | 0 | 25 | 404 | 32 | 419 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002437276.1 | 0 | 31 | 405 | 25 | 404 | hypothetical protein SORBIDRAFT_10g024020 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 7e-21 | 107 | 342 | 90 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 3e-17 | 75 | 391 | 26 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 3e-17 | 75 | 391 | 26 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 3e-17 | 75 | 391 | 26 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 3e-17 | 75 | 391 | 26 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |