Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.C02251.1 |
Family | GH28 |
Protein Properties | Length: 413 Molecular Weight: 44772.4 Isoelectric Point: 9.0868 |
Chromosome | Chromosome/Scaffold: 3 Start: 41636107 End: 41638087 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 78 | 401 | 0 |
GAYRRRLYVPLGTYRLWPVVFEGPCAGLIIVTIKGVLKGPDDPSTFSLNHWITFQYIDGMRIHGGGTLDGQGHHAWPYNKCACSPLPISVRLNFVNNTII KSISSVDSKNFHFNVFSCHNIEFRRVQIIAPDESPNTDGIHIGDSSRIKITDSQIKTGDDCVSIGPGSKDIEIVGVHCGPGHGFSVGSLGKYPNEADVTG LSVRQCTMTGSQNGVRIKTWASPLKSRAYNFSFHDITMRDVHSPIIIDQEYCPKGGCSAQAASNVQIEDILFSKIKGTSASQVAVDLICSPSVPCKNINL RDINLEYTGSKGPVKSICAHVRGN |
Full Sequence |
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Protein Sequence Length: 413 Download |
MDTSSCHGKI FLLFSSTLVL LLAALVIGAP SRALAKRNPA HARVKVFDVR KFGAVGDGKT 60 ENSKAFLDAW RQACQYKGAY RRRLYVPLGT YRLWPVVFEG PCAGLIIVTI KGVLKGPDDP 120 STFSLNHWIT FQYIDGMRIH GGGTLDGQGH HAWPYNKCAC SPLPISVRLN FVNNTIIKSI 180 SSVDSKNFHF NVFSCHNIEF RRVQIIAPDE SPNTDGIHIG DSSRIKITDS QIKTGDDCVS 240 IGPGSKDIEI VGVHCGPGHG FSVGSLGKYP NEADVTGLSV RQCTMTGSQN GVRIKTWASP 300 LKSRAYNFSF HDITMRDVHS PIIIDQEYCP KGGCSAQAAS NVQIEDILFS KIKGTSASQV 360 AVDLICSPSV PCKNINLRDI NLEYTGSKGP VKSICAHVRG NVRGVQKPSP CI* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 7.0e-82 | 45 | 400 | 362 | + polygalacturonase | ||
PLN02793 | PLN02793 | 1.0e-87 | 34 | 411 | 393 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 5.0e-88 | 46 | 412 | 371 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 3.0e-98 | 86 | 398 | 317 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 4.0e-137 | 47 | 411 | 371 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAQ63000.1 | 0 | 43 | 412 | 58 | 432 | oil palm polygalacturonase allergen PEST643 [Elaeis guineensis] |
RefSeq | XP_002273801.1 | 0 | 40 | 412 | 23 | 396 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002282563.1 | 0 | 46 | 411 | 27 | 394 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002282573.1 | 0 | 46 | 411 | 27 | 394 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002314146.1 | 0 | 44 | 411 | 24 | 391 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-16 | 139 | 354 | 113 | 339 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_B | 0.00000000000003 | 172 | 398 | 112 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_A | 0.00000000000003 | 172 | 398 | 112 | 333 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ia5_A | 0.00000000000003 | 172 | 398 | 112 | 333 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 1rmg_A | 0.0000000000002 | 44 | 401 | 18 | 356 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |