| Basic Information | |
|---|---|
| Species | Eucalyptus grandis |
| Cazyme ID | Eucgr.C02253.1 |
| Family | PL1 |
| Protein Properties | Length: 335 Molecular Weight: 35779.8 Isoelectric Point: 5.8847 |
| Chromosome | Chromosome/Scaffold: 3 Start: 41654215 End: 41656295 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 4 | 191 | 2.24208e-44 |
| NLRNELLISSFKTINGRGANVQKTGLGCLIIMTSPTSSSTMCTFTTASLLGMPRSGLAPLKLPRGEDQAVTISVLASSKIWIDHCFLSDCTDGLIDVTEG STAVTISSNMFTHHDKVMRLGHSDDFTANSGMQVTVAFNHFGEELKESMPRCRFGYFHVVNNDYTRWKIYAVGGSSNPTVNSQGNQYF | |||
| Full Sequence |
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| Protein Sequence Length: 335 Download |
| MVINLRNELL ISSFKTINGR GANVQKTGLG CLIIMTSPTS SSTMCTFTTA SLLGMPRSGL 60 APLKLPRGED QAVTISVLAS SKIWIDHCFL SDCTDGLIDV TEGSTAVTIS SNMFTHHDKV 120 MRLGHSDDFT ANSGMQVTVA FNHFGEELKE SMPRCRFGYF HVVNNDYTRW KIYAVGGSSN 180 PTVNSQGNQY FAPQDDNNKE VTKRMDTDES EWRKWNWRSE DMSPLYAEAS SMSFPSASYI 240 NHLTATAGVF VVQRSDAGTV TNPSSGGGIV TNPAAPGSSG GTVRNPVPSG GDGSSCYPGQ 300 GSTGTVTGTG GWYPDNGIDF GSIFNSEART PLSQ* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 3.0e-16 | 80 | 191 | 123 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 1.0e-50 | 13 | 190 | 186 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 3.0e-52 | 1 | 193 | 204 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAL24172.1 | 0 | 1 | 271 | 1 | 290 | putative pectate lyase [Arabidopsis thaliana] |
| RefSeq | NP_191052.2 | 0 | 1 | 265 | 155 | 427 | PMR6 (powdery mildew resistant 6); lyase/ pectate lyase [Arabidopsis thaliana] |
| RefSeq | XP_002268818.1 | 0 | 1 | 263 | 147 | 425 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002316399.1 | 0 | 1 | 250 | 146 | 411 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002534016.1 | 0 | 1 | 263 | 147 | 425 | Pectate lyase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 1 | 219 | 76 | 298 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 1 | 219 | 76 | 298 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 3zsc_A | 0.00000000000002 | 66 | 190 | 109 | 246 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 1vbl_A | 0.0000000000002 | 74 | 167 | 191 | 301 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 1pcl_A | 0.00000000006 | 80 | 167 | 141 | 246 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| FC916488 | 255 | 20 | 258 | 0 |
| DY275830 | 255 | 20 | 258 | 0 |
| EB428296 | 264 | 1 | 248 | 0 |
| JG577567 | 221 | 1 | 220 | 0 |
| EV155463 | 221 | 1 | 220 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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