y
Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.C02449.1 |
Family | CE8 |
Protein Properties | Length: 307 Molecular Weight: 33831 Isoelectric Point: 9.1043 |
Chromosome | Chromosome/Scaffold: 3 Start: 46652371 End: 46654822 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 17 | 296 | 0 |
LGNVTTIQSAIDSIPSNNKKWVCIYIKKGIYREKVKIPEDKPYIILKGQAKRTTEIVWDDHDNIVQSPTFTSLADNIIAKSISFRNSYNNPINKKHPRVP AVAARISGDKNVFHRCGFYGLQDTLWDDQGRHYFKRCTVQGAVDFIFGGGQSIYENCAISVLGGALGSGVTGFITAQGRSNPDDASGFVFKECNVFGSGS ALLGRAWRAYARVIFYRSNFTDVVNPRGWDAWNFAGQESQLTFSEYECYGPGSGTSLRASWEKKLNVATVNQLTSTSFVD |
Full Sequence |
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Protein Sequence Length: 307 Download |
GNVAPYRTIF VDPSGRLGNV TTIQSAIDSI PSNNKKWVCI YIKKGIYREK VKIPEDKPYI 60 ILKGQAKRTT EIVWDDHDNI VQSPTFTSLA DNIIAKSISF RNSYNNPINK KHPRVPAVAA 120 RISGDKNVFH RCGFYGLQDT LWDDQGRHYF KRCTVQGAVD FIFGGGQSIY ENCAISVLGG 180 ALGSGVTGFI TAQGRSNPDD ASGFVFKECN VFGSGSALLG RAWRAYARVI FYRSNFTDVV 240 NPRGWDAWNF AGQESQLTFS EYECYGPGSG TSLRASWEKK LNVATVNQLT STSFVDSEGW 300 LSSQPS* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02304 | PLN02304 | 3.0e-85 | 8 | 303 | 305 | + probable pectinesterase | ||
PLN02432 | PLN02432 | 2.0e-87 | 9 | 301 | 293 | + putative pectinesterase | ||
PLN02480 | PLN02480 | 8.0e-90 | 7 | 301 | 297 | + Probable pectinesterase | ||
PLN02176 | PLN02176 | 7.0e-115 | 7 | 305 | 300 | + putative pectinesterase | ||
PLN02497 | PLN02497 | 3.0e-176 | 7 | 305 | 300 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI40838.1 | 0 | 6 | 305 | 42 | 341 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_189055.1 | 0 | 7 | 305 | 32 | 332 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002263748.1 | 0 | 2 | 305 | 25 | 328 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002323773.1 | 0 | 9 | 305 | 1 | 288 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002518106.1 | 0 | 5 | 305 | 44 | 335 | Pectinesterase U1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 5.99756e-43 | 3 | 303 | 5 | 310 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 2e-36 | 18 | 303 | 13 | 306 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 9e-19 | 22 | 272 | 20 | 314 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 9e-19 | 22 | 272 | 20 | 314 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 2e-18 | 22 | 272 | 20 | 314 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
AW036464 | 210 | 70 | 278 | 0 |
DV984237 | 291 | 19 | 301 | 0 |
EE476551 | 221 | 9 | 226 | 0 |
EX315894 | 276 | 34 | 301 | 0 |
EX317112 | 274 | 36 | 301 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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