Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.C02785.1 |
Family | GH28 |
Protein Properties | Length: 396 Molecular Weight: 41194.2 Isoelectric Point: 7.1739 |
Chromosome | Chromosome/Scaffold: 3 Start: 53068058 End: 53070795 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 64 | 382 | 0 |
RGTPTLVVPGGKKFKLSPVSFKGPCKSSSFIVKIDGTLVAPSSPSEWKGCSADSWLVFQDVANLNVKGSGQVDGQGSLWWGGAKNNNKTVSQALSFFHCI NLVLSGLQHINSPKNHISISGCDGGTISNLRISAPETSPNTDGIDISSTNHLNIQELNIQTGDDCIAINGNSSYITITGVSCGPGHGISIGSLGEHGISD TVEGVQVQHCTFTGSTNGARIKTWQGGSGYAKGITFDQITLNAVKNPIIIDQFYTNEASSVAVSNVTYTGFRGTSASDQAIILSCSSIGCLDIRLDNNMI TSSTPGKTVTSWCKNAHGS |
Full Sequence |
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Protein Sequence Length: 396 Download |
MQGFVAAIYL VLFAAPSTFS SHGIVAASPI YNVINYGAIG NGVDDDTQAF VKAWGDSCGD 60 SGARGTPTLV VPGGKKFKLS PVSFKGPCKS SSFIVKIDGT LVAPSSPSEW KGCSADSWLV 120 FQDVANLNVK GSGQVDGQGS LWWGGAKNNN KTVSQALSFF HCINLVLSGL QHINSPKNHI 180 SISGCDGGTI SNLRISAPET SPNTDGIDIS STNHLNIQEL NIQTGDDCIA INGNSSYITI 240 TGVSCGPGHG ISIGSLGEHG ISDTVEGVQV QHCTFTGSTN GARIKTWQGG SGYAKGITFD 300 QITLNAVKNP IIIDQFYTNE ASSVAVSNVT YTGFRGTSAS DQAIILSCSS IGCLDIRLDN 360 NMITSSTPGK TVTSWCKNAH GSATLTTPRV RCLLK* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 4.0e-81 | 32 | 380 | 363 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 1.0e-81 | 63 | 383 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 2.0e-100 | 30 | 384 | 368 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 9.0e-110 | 24 | 393 | 382 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 7.0e-114 | 30 | 384 | 363 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAY21049.1 | 0 | 1 | 393 | 1 | 396 | PGN [Glycine max] |
EMBL | CBI36307.1 | 0 | 32 | 393 | 33 | 402 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002266543.1 | 0 | 32 | 393 | 21 | 374 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002324855.1 | 0 | 9 | 393 | 8 | 394 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515526.1 | 0 | 1 | 393 | 1 | 392 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 4e-23 | 111 | 323 | 97 | 320 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 5e-22 | 109 | 353 | 57 | 309 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 5e-22 | 109 | 353 | 57 | 309 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 5e-22 | 109 | 353 | 57 | 309 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 5e-22 | 109 | 353 | 57 | 309 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |