Basic Information | |
---|---|
Species | Eucalyptus grandis |
Cazyme ID | Eucgr.C02787.1 |
Family | GH28 |
Protein Properties | Length: 392 Molecular Weight: 40268.5 Isoelectric Point: 4.7249 |
Chromosome | Chromosome/Scaffold: 3 Start: 53085414 End: 53087941 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 61 | 378 | 0 |
EKGTPTLAVPGGKKFRLSPVAFKGPCKSSSINVQIDGTLVAPSSLSGWKGCSSGKWLNFQDVANLNVKGSGQVDGQGSPWWDGAEALAFSQCVNLVLSGL KHVNSPRNHISISGCDNGIVSNLQITAPESSPNTDGIDISHTNNLDIHDLDIQTGDDCIAINGGSSNISITRVSCGPGHGVSIGSLGKNGAYETVEQVQV RDCSFSGTTNGVRIKTWQGGSGYAKNIIFDQIKLDAVSNPIIIDQFYNPGGAQPNEASGVVVSDVTFTGFRGSSASDQAIKLSCSSVGCSDITLDNVQIT SSKPGDTVTASCENAHGS |
Full Sequence |
---|
Protein Sequence Length: 392 Download |
GFVAAIYLVL FAASSTFSSH GIVAASTTYN VVNYGATGSG DDDDAQAFVK AWEDTCGDSG 60 EKGTPTLAVP GGKKFRLSPV AFKGPCKSSS INVQIDGTLV APSSLSGWKG CSSGKWLNFQ 120 DVANLNVKGS GQVDGQGSPW WDGAEALAFS QCVNLVLSGL KHVNSPRNHI SISGCDNGIV 180 SNLQITAPES SPNTDGIDIS HTNNLDIHDL DIQTGDDCIA INGGSSNISI TRVSCGPGHG 240 VSIGSLGKNG AYETVEQVQV RDCSFSGTTN GVRIKTWQGG SGYAKNIIFD QIKLDAVSNP 300 IIIDQFYNPG GAQPNEASGV VVSDVTFTGF RGSSASDQAI KLSCSSVGCS DITLDNVQIT 360 SSKPGDTVTA SCENAHGSAT LTTPPVRCLG S* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 2.0e-81 | 2 | 375 | 396 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 7.0e-83 | 25 | 376 | 368 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-93 | 31 | 391 | 376 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 5.0e-106 | 22 | 389 | 378 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 2.0e-112 | 29 | 380 | 354 | + polygalacturonase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAY21049.1 | 0 | 2 | 389 | 3 | 396 | PGN [Glycine max] |
EMBL | CBI36307.1 | 0 | 30 | 389 | 33 | 402 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002266543.1 | 0 | 30 | 389 | 21 | 374 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002324855.1 | 0 | 7 | 389 | 8 | 394 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515526.1 | 0 | 6 | 389 | 6 | 392 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 2e-24 | 133 | 375 | 80 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-24 | 133 | 375 | 80 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-24 | 133 | 375 | 80 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-24 | 133 | 375 | 80 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 2e-24 | 133 | 375 | 80 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |