Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.C02788.1 |
Family | GH28 |
Protein Properties | Length: 407 Molecular Weight: 42438.3 Isoelectric Point: 5.9734 |
Chromosome | Chromosome/Scaffold: 3 Start: 53099197 End: 53101789 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 68 | 393 | 0 |
EKGTPTLAVPGGKKFRLSPVAFKGPCKSSSINVQIDGTLVAPSSLSGWKGCSSGRWLNFQDVANLNVKGSGQVDGQGSLWWDGAKGGCEKRPTALVFLNC INLILSGLHHVNSPRNHISIINCHNGIISNLHITAPESSPNTDGIDISRTNNLDIHDLDIQTGDDCIAINGGSSNISITRVSCGPGHGISIGSLGKNGAY ETVEQVQVRDCTFRGTTNGVRIKTWQGGSGYAKNIIFNQIKLDAVSNPIIIDQFYNPGGAQLNEASSVVVSDVSFTSIRGTSASDQAIKLSCSSVGCSDI TLDNVQITSSKPGETVTASCENCHGS |
Full Sequence |
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Protein Sequence Length: 407 Download |
MPVFYEVGFV AAIYLVLFAA SSTFSSHGIV AASPTYNVVN YGATGSGDDD DSQAFVKAWE 60 DTCGDSGEKG TPTLAVPGGK KFRLSPVAFK GPCKSSSINV QIDGTLVAPS SLSGWKGCSS 120 GRWLNFQDVA NLNVKGSGQV DGQGSLWWDG AKGGCEKRPT ALVFLNCINL ILSGLHHVNS 180 PRNHISIINC HNGIISNLHI TAPESSPNTD GIDISRTNNL DIHDLDIQTG DDCIAINGGS 240 SNISITRVSC GPGHGISIGS LGKNGAYETV EQVQVRDCTF RGTTNGVRIK TWQGGSGYAK 300 NIIFNQIKLD AVSNPIIIDQ FYNPGGAQLN EASSVVVSDV SFTSIRGTSA SDQAIKLSCS 360 SVGCSDITLD NVQITSSKPG ETVTASCENC HGSATSTTPP VSCLIH* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 7.0e-84 | 32 | 389 | 367 | + polygalacturonase ADPG | ||
PLN02188 | PLN02188 | 7.0e-87 | 9 | 403 | 403 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02793 | PLN02793 | 2.0e-96 | 38 | 404 | 374 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 3.0e-106 | 29 | 404 | 382 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 2.0e-107 | 36 | 397 | 364 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAY21049.1 | 0 | 7 | 406 | 1 | 398 | PGN [Glycine max] |
GenBank | ABC75354.1 | 0 | 29 | 404 | 11 | 394 | Glycoside hydrolase, family 28 [Medicago truncatula] |
RefSeq | XP_002266960.1 | 0 | 35 | 406 | 19 | 391 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002324855.1 | 0 | 14 | 404 | 8 | 394 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515526.1 | 0 | 13 | 404 | 6 | 392 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 7e-26 | 140 | 389 | 80 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 7e-26 | 140 | 389 | 80 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 7e-26 | 140 | 389 | 80 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 7e-26 | 140 | 389 | 80 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 7e-26 | 140 | 389 | 80 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |