Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.C04137.1 |
Family | CBM43 |
Protein Properties | Length: 559 Molecular Weight: 63425.2 Isoelectric Point: 5.1336 |
Chromosome | Chromosome/Scaffold: 3 Start: 76172026 End: 76174800 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 442 | 523 | 3.5e-26 |
WCILNPELNDLTDLGENIDYACKSSDCTALGYGSSCNNLSSQGNASYAFNRYYQMNDQRIMACDFQGLAEVTENDPSTEECQ | |||
GH17 | 99 | 419 | 0 |
VGVNWGTQSNHQLPPEKVVKMLKENGIKKLKLFEYDEKILGALAGSKIEVMLAVPNYMLEIMSVDPSFAASWVDTNVTSYRYTGGVNIKYIAVGNEPFLQ SYNHKYVRQVLPALRNIHEALHRARLSSKVKVTVPFNADVYYSPPPNEYPSSGDFRPEVRDAAIEIIHFLYINDSPFTVNIYPFLSLYQNQNFPVDFAFF DGTTEPVKDGDRVYTNVFDANFDILVSALTKAGYSDMEILVGEIGWPTDGDKFANIKNAQRFNQGLLKHALSGDGTPARKGVIDVYLFSLIDEDTKNIDP GNFERHWGLFEYDGKPKYELD |
Full Sequence |
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Protein Sequence Length: 559 Download |
MNSSLWGKLI VWQKKIYLID EWRTSPTLSF HIPPLIVFWA VLFSDSFKIF PLFSLRKIQR 60 DPSEESPKKM AESISHYPFP TLGLIVLCFM TMFSIGSSVG VNWGTQSNHQ LPPEKVVKML 120 KENGIKKLKL FEYDEKILGA LAGSKIEVML AVPNYMLEIM SVDPSFAASW VDTNVTSYRY 180 TGGVNIKYIA VGNEPFLQSY NHKYVRQVLP ALRNIHEALH RARLSSKVKV TVPFNADVYY 240 SPPPNEYPSS GDFRPEVRDA AIEIIHFLYI NDSPFTVNIY PFLSLYQNQN FPVDFAFFDG 300 TTEPVKDGDR VYTNVFDANF DILVSALTKA GYSDMEILVG EIGWPTDGDK FANIKNAQRF 360 NQGLLKHALS GDGTPARKGV IDVYLFSLID EDTKNIDPGN FERHWGLFEY DGKPKYELDL 420 SGSEKDTRLV PVMGVSYMPR RWCILNPELN DLTDLGENID YACKSSDCTA LGYGSSCNNL 480 SSQGNASYAF NRYYQMNDQR IMACDFQGLA EVTENDPSTE ECQFPLMLAS GDSMSWNQGS 540 LHTSFRFYLW FLVFWVIL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam06106 | DUF950 | 0.005 | 267 | 307 | 49 | + Staphylococcus protein of unknown function (DUF950). This family consists of several hypothetical proteins from different Staphylococcus species. The function of this family is unknown. | ||
COG5309 | COG5309 | 3.0e-5 | 337 | 411 | 79 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam07983 | X8 | 3.0e-17 | 441 | 510 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 3.0e-29 | 442 | 524 | 85 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
pfam00332 | Glyco_hydro_17 | 7.0e-78 | 99 | 419 | 323 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI28113.1 | 0 | 68 | 538 | 517 | 960 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_189076.1 | 0 | 85 | 557 | 18 | 497 | glycosyl hydrolase family 17 protein [Arabidopsis thaliana] |
RefSeq | XP_002281500.1 | 0 | 82 | 538 | 12 | 467 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002324967.1 | 0 | 95 | 538 | 5 | 449 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515573.1 | 0 | 77 | 558 | 7 | 489 | Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3f55_D | 0 | 99 | 421 | 2 | 316 | A Chain A, Crystal Structure Of Class V Chitinase From Nicotiana Tobaccum |
PDB | 3f55_C | 0 | 99 | 421 | 2 | 316 | A Chain A, Crystal Structure Of Class V Chitinase From Nicotiana Tobaccum |
PDB | 3f55_B | 0 | 99 | 421 | 2 | 316 | A Chain A, Crystal Structure Of Class V Chitinase From Nicotiana Tobaccum |
PDB | 3f55_A | 0 | 99 | 421 | 2 | 316 | A Chain A, Crystal Structure Of Class V Chitinase From Nicotiana Tobaccum |
PDB | 3em5_D | 0 | 99 | 421 | 2 | 316 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |