| Basic Information | |
|---|---|
| Species | Eucalyptus grandis |
| Cazyme ID | Eucgr.D00086.1 |
| Family | AA7 |
| Protein Properties | Length: 515 Molecular Weight: 57690.8 Isoelectric Point: 7.3992 |
| Chromosome | Chromosome/Scaffold: 4 Start: 1373510 End: 1375054 |
| Description | FAD-binding Berberine family protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA7 | 55 | 510 | 0 |
| LLSTPKPLVIVTPTRESHVQAAVLCSKDLGMHLKIRSGGHDFEGISYVSNDAFFILDMFNLRSIDVDIKEETAWVQAGATLGELYYRIWEKSKVHGFPAG VCATVGVGGHLSGAGYGNMLRKYGLSVDNVLDAKMVDVQGRILDRKAMGEDLFWAIIGGGGASFGVILAYQIKLVPVPEKVTVFRVEKTLDQNATDLVYK WQFVAPTTDHGLFMRLVLQPVTSKTQKGHKTLRASVVGLFLGNSDQLLALTEEELPEMGLKKGNCTEMSWIESVLWWDGFDEGTIPALETLLSRDHSTNF RKRKSDYVQTPISRANLDCLWKKMIELGKVGLMFNPYGGRMSEIPASATPFPHRAGNLFKIQYFINWSKDDPELEKNYLAQIRRLYSFMTPFVSKNPRGA YLNYRDLDIGTSTNGNNSYEEGRVYGVKYFNDNFERLVKVKTAVDPNDFFRNEQSI | |||
| Full Sequence |
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| Protein Sequence Length: 515 Download |
| KEHGASSDSV YDTFIQCLAH RTQPSDHISD IVYSQANSSF VNVLVSYIRN GHFNLLSTPK 60 PLVIVTPTRE SHVQAAVLCS KDLGMHLKIR SGGHDFEGIS YVSNDAFFIL DMFNLRSIDV 120 DIKEETAWVQ AGATLGELYY RIWEKSKVHG FPAGVCATVG VGGHLSGAGY GNMLRKYGLS 180 VDNVLDAKMV DVQGRILDRK AMGEDLFWAI IGGGGASFGV ILAYQIKLVP VPEKVTVFRV 240 EKTLDQNATD LVYKWQFVAP TTDHGLFMRL VLQPVTSKTQ KGHKTLRASV VGLFLGNSDQ 300 LLALTEEELP EMGLKKGNCT EMSWIESVLW WDGFDEGTIP ALETLLSRDH STNFRKRKSD 360 YVQTPISRAN LDCLWKKMIE LGKVGLMFNP YGGRMSEIPA SATPFPHRAG NLFKIQYFIN 420 WSKDDPELEK NYLAQIRRLY SFMTPFVSKN PRGAYLNYRD LDIGTSTNGN NSYEEGRVYG 480 VKYFNDNFER LVKVKTAVDP NDFFRNEQSI PTLI* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02441 | PLN02441 | 0.0004 | 53 | 240 | 200 | + cytokinin dehydrogenase | ||
| PRK11230 | PRK11230 | 0.0001 | 61 | 237 | 194 | + glycolate oxidase subunit GlcD; Provisional | ||
| pfam08031 | BBE | 8.0e-17 | 454 | 511 | 58 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. | ||
| COG0277 | GlcD | 3.0e-25 | 61 | 513 | 468 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
| pfam01565 | FAD_binding_4 | 3.0e-27 | 61 | 198 | 139 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
| GO:0016491 | oxidoreductase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN81650.1 | 0 | 6 | 513 | 30 | 531 | hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002267223.1 | 0 | 6 | 513 | 30 | 531 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002268606.1 | 0 | 6 | 513 | 30 | 531 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002299028.1 | 0 | 8 | 513 | 30 | 532 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002317087.1 | 0 | 8 | 513 | 30 | 531 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 4dns_B | 0 | 14 | 514 | 13 | 497 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 4dns_A | 0 | 14 | 514 | 13 | 497 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3vte_A | 0 | 12 | 513 | 5 | 513 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
| PDB | 3tsj_B | 0 | 12 | 514 | 9 | 497 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
| PDB | 3tsj_A | 0 | 12 | 514 | 9 | 497 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO777438 | 515 | 6 | 513 | 0 |
| HO781153 | 350 | 171 | 514 | 0 |
| DY290183 | 371 | 93 | 458 | 0 |
| HS066008 | 242 | 7 | 248 | 0 |
| DY275452 | 393 | 123 | 511 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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