y
Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.D01324.1 |
Family | CBM53 |
Protein Properties | Length: 1193 Molecular Weight: 135463 Isoelectric Point: 5.9861 |
Chromosome | Chromosome/Scaffold: 4 Start: 23768282 End: 23781171 |
Description | starch synthase 3 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM53 | 309 | 391 | 3.1e-30 |
DVEIFLNRSLSTLSNEPDVLIMGAFNDWRWKSFTVRLSKTHLSGDWWSSLIHIPKEAYKMDFVFFNGQNVYDNNDKKDFSISV | |||
CBM53 | 644 | 732 | 4.4e-33 |
GDTVTVFYNPANTVLHGKSEIWFRCSFNRWTHRKGPLPPQRMVPVENGSHVKATVKIPLDAYVIDFVFSEREDGGIFDNKFGMDYHIPV | |||
CBM53 | 483 | 572 | 1.6e-33 |
DMVRLYYNRSSGPLAHANELWIHGGHNNWKDGLTIAERLDKSERKDGDWWYAKVVVPDQAVVLDWVLTDGPPHNAVVYDNNNRQDFHAIV | |||
GT5 | 743 | 1186 | 0 |
HIVHIAVEMAPIAKVGGLGDVVTSLSRAVQELNHNVDIVFPKYDCLNLSNVKDFQFHRSYGWGGTEIKVWHGKVEGLSVYFLEPQNGFFSRGCVYGCNND GERFGFFCHAALEFLHQSGFHPDIIHCHDWSSAPVSWLFKDHYKQYGLSKARIVFTIHNLEFGAQLIGKAMAYADKATTVSNTYSKEISGNPVIAPHLFK FHGILNGIDPDIWDPYNDKFIPISYTPENVVEGKRAAKEALQQRLGLKKADLPLVGIITRLTHQKGIHLIKHAIWHTLERNGQVVLLGSAPDPRIQNDFV NLANQLHSSHGDRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLYDTVFDVDHDKDRAQAQGLEPNGFSFDGADSAGV DYALNRALSGWYDGRDWFNSLCKTVMEQDWSWNRPALDYMELYH |
Full Sequence |
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Protein Sequence Length: 1193 Download |
MEMALRAPSP VSSGPALGAA ARRRLRIEPR VASAPSRFTP WQTGNLSYGV PFRITAASAD 60 FSRRRNRRTS SARPRGSSPK GFMPKVPVGT STQNKDVGKD GQKKGTGSPT SEHSALELKS 120 DFDEEQDLEL IQRNEIDEER DSDFGDYLED TTTASIDSAA LTDEQDRFVE NGSMVRNSEE 180 AVESPHKEVA SMRDINNVAD VGDEKGDALK SNEQDDDTIK VKSFELDEER IDEDSLKLEM 240 ETSLRKQEAE AALKLEMEAN LRKREAEAAL KLEMEANLRK QEIERLAMES FARGNKLFFY 300 PPVVKPDLDV EIFLNRSLST LSNEPDVLIM GAFNDWRWKS FTVRLSKTHL SGDWWSSLIH 360 IPKEAYKMDF VFFNGQNVYD NNDKKDFSIS VEDAMDPIAF EDFLLEEKRR ELEKLAKEEA 420 ERERKVEEQR RIEAERAASE ADRAQARVEV GKRQEALQQL IKKTAKSVDN VWYIEPSEFK 480 GDDMVRLYYN RSSGPLAHAN ELWIHGGHNN WKDGLTIAER LDKSERKDGD WWYAKVVVPD 540 QAVVLDWVLT DGPPHNAVVY DNNNRQDFHA IVPNSIPEEL YWVEEEHQIY RKLQEERRLR 600 EEAIRAKAEK TALMKAETKK RTLKTFLLSQ KHIVYTEPLD MKAGDTVTVF YNPANTVLHG 660 KSEIWFRCSF NRWTHRKGPL PPQRMVPVEN GSHVKATVKI PLDAYVIDFV FSEREDGGIF 720 DNKFGMDYHI PVFGGLIREP PMHIVHIAVE MAPIAKVGGL GDVVTSLSRA VQELNHNVDI 780 VFPKYDCLNL SNVKDFQFHR SYGWGGTEIK VWHGKVEGLS VYFLEPQNGF FSRGCVYGCN 840 NDGERFGFFC HAALEFLHQS GFHPDIIHCH DWSSAPVSWL FKDHYKQYGL SKARIVFTIH 900 NLEFGAQLIG KAMAYADKAT TVSNTYSKEI SGNPVIAPHL FKFHGILNGI DPDIWDPYND 960 KFIPISYTPE NVVEGKRAAK EALQQRLGLK KADLPLVGII TRLTHQKGIH LIKHAIWHTL 1020 ERNGQVVLLG SAPDPRIQND FVNLANQLHS SHGDRARLCL TYDEPLSHLI YAGADFILVP 1080 SIFEPCGLTQ LTAMRYGSIP VVRKTGGLYD TVFDVDHDKD RAQAQGLEPN GFSFDGADSA 1140 GVDYALNRAL SGWYDGRDWF NSLCKTVMEQ DWSWNRPALD YMELYHAARK LG* 1200 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02939 | PLN02939 | 8.0e-141 | 742 | 1188 | 493 | + transferase, transferring glycosyl groups | ||
TIGR02095 | glgA | 6.0e-155 | 742 | 1188 | 489 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
PRK00654 | glgA | 4.0e-168 | 742 | 1190 | 489 | + glycogen synthase; Provisional | ||
cd03791 | GT1_Glycogen_synthase_DULL1_like | 1.0e-179 | 743 | 1186 | 489 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
PLN02316 | PLN02316 | 0 | 76 | 1190 | 1115 | + synthase/transferase |
Gene Ontology | |
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GO Term | Description |
GO:0009058 | biosynthetic process |
GO:2001070 | starch binding |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACT09059.1 | 0 | 1 | 1191 | 1 | 1229 | starch synthase III precursor [Solanum lycopersicum] |
RefSeq | XP_002269011.1 | 0 | 67 | 1190 | 33 | 1140 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002305571.1 | 0.00000004 | 70 | 170 | 2 | 102 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002305571.1 | 0 | 214 | 1190 | 58 | 1017 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002518476.1 | 0 | 70 | 1190 | 2 | 1058 | starch synthase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3d1j_A | 0 | 742 | 1186 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 3guh_A | 0 | 742 | 1186 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 2r4u_A | 0 | 742 | 1186 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 2r4t_A | 0 | 742 | 1186 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 2qzs_A | 0 | 742 | 1186 | 1 | 474 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO778003 | 699 | 279 | 977 | 0 |
HO794758 | 568 | 624 | 1191 | 0 |
HO778003 | 308 | 448 | 732 | 0.000000000000001 |
HO794758 | 101 | 297 | 391 | 1.2 |
HO794758 | 133 | 449 | 579 | 6.4 |
Sequence Alignments (This image is cropped. Click for full image.) |
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