Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.D01324.2 |
Family | CBM53 |
Protein Properties | Length: 1188 Molecular Weight: 134803 Isoelectric Point: 5.9861 |
Chromosome | Chromosome/Scaffold: 4 Start: 23768282 End: 23781171 |
Description | starch synthase 3 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM53 | 304 | 386 | 3.1e-30 |
DVEIFLNRSLSTLSNEPDVLIMGAFNDWRWKSFTVRLSKTHLSGDWWSSLIHIPKEAYKMDFVFFNGQNVYDNNDKKDFSISV | |||
CBM53 | 639 | 727 | 4.4e-33 |
GDTVTVFYNPANTVLHGKSEIWFRCSFNRWTHRKGPLPPQRMVPVENGSHVKATVKIPLDAYVIDFVFSEREDGGIFDNKFGMDYHIPV | |||
CBM53 | 478 | 567 | 1.5e-33 |
DMVRLYYNRSSGPLAHANELWIHGGHNNWKDGLTIAERLDKSERKDGDWWYAKVVVPDQAVVLDWVLTDGPPHNAVVYDNNNRQDFHAIV | |||
GT5 | 738 | 1181 | 0 |
HIVHIAVEMAPIAKVGGLGDVVTSLSRAVQELNHNVDIVFPKYDCLNLSNVKDFQFHRSYGWGGTEIKVWHGKVEGLSVYFLEPQNGFFSRGCVYGCNND GERFGFFCHAALEFLHQSGFHPDIIHCHDWSSAPVSWLFKDHYKQYGLSKARIVFTIHNLEFGAQLIGKAMAYADKATTVSNTYSKEISGNPVIAPHLFK FHGILNGIDPDIWDPYNDKFIPISYTPENVVEGKRAAKEALQQRLGLKKADLPLVGIITRLTHQKGIHLIKHAIWHTLERNGQVVLLGSAPDPRIQNDFV NLANQLHSSHGDRARLCLTYDEPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLYDTVFDVDHDKDRAQAQGLEPNGFSFDGADSAGV DYALNRALSGWYDGRDWFNSLCKTVMEQDWSWNRPALDYMELYH |
Full Sequence |
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Protein Sequence Length: 1188 Download |
MEMALRAPSP VSSGPALGAA ARRRLRIEPR VASAPSRTGN LSYGVPFRIT AASADFSRRR 60 NRRTSSARPR GSSPKGFMPK VPVGTSTQNK DVGKDGQKKG TGSPTSEHSA LELKSDFDEE 120 QDLELIQRNE IDEERDSDFG DYLEDTTTAS IDSAALTDEQ DRFVENGSMV RNSEEAVESP 180 HKEVASMRDI NNVADVGDEK GDALKSNEQD DDTIKVKSFE LDEERIDEDS LKLEMETSLR 240 KQEAEAALKL EMEANLRKRE AEAALKLEME ANLRKQEIER LAMESFARGN KLFFYPPVVK 300 PDLDVEIFLN RSLSTLSNEP DVLIMGAFND WRWKSFTVRL SKTHLSGDWW SSLIHIPKEA 360 YKMDFVFFNG QNVYDNNDKK DFSISVEDAM DPIAFEDFLL EEKRRELEKL AKEEAERERK 420 VEEQRRIEAE RAASEADRAQ ARVEVGKRQE ALQQLIKKTA KSVDNVWYIE PSEFKGDDMV 480 RLYYNRSSGP LAHANELWIH GGHNNWKDGL TIAERLDKSE RKDGDWWYAK VVVPDQAVVL 540 DWVLTDGPPH NAVVYDNNNR QDFHAIVPNS IPEELYWVEE EHQIYRKLQE ERRLREEAIR 600 AKAEKTALMK AETKKRTLKT FLLSQKHIVY TEPLDMKAGD TVTVFYNPAN TVLHGKSEIW 660 FRCSFNRWTH RKGPLPPQRM VPVENGSHVK ATVKIPLDAY VIDFVFSERE DGGIFDNKFG 720 MDYHIPVFGG LIREPPMHIV HIAVEMAPIA KVGGLGDVVT SLSRAVQELN HNVDIVFPKY 780 DCLNLSNVKD FQFHRSYGWG GTEIKVWHGK VEGLSVYFLE PQNGFFSRGC VYGCNNDGER 840 FGFFCHAALE FLHQSGFHPD IIHCHDWSSA PVSWLFKDHY KQYGLSKARI VFTIHNLEFG 900 AQLIGKAMAY ADKATTVSNT YSKEISGNPV IAPHLFKFHG ILNGIDPDIW DPYNDKFIPI 960 SYTPENVVEG KRAAKEALQQ RLGLKKADLP LVGIITRLTH QKGIHLIKHA IWHTLERNGQ 1020 VVLLGSAPDP RIQNDFVNLA NQLHSSHGDR ARLCLTYDEP LSHLIYAGAD FILVPSIFEP 1080 CGLTQLTAMR YGSIPVVRKT GGLYDTVFDV DHDKDRAQAQ GLEPNGFSFD GADSAGVDYA 1140 LNRALSGWYD GRDWFNSLCK TVMEQDWSWN RPALDYMELY HAARKLG* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02939 | PLN02939 | 8.0e-141 | 737 | 1183 | 493 | + transferase, transferring glycosyl groups | ||
TIGR02095 | glgA | 6.0e-155 | 737 | 1183 | 489 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
PRK00654 | glgA | 4.0e-168 | 737 | 1185 | 489 | + glycogen synthase; Provisional | ||
cd03791 | GT1_Glycogen_synthase_DULL1_like | 1.0e-179 | 738 | 1181 | 489 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
PLN02316 | PLN02316 | 0 | 71 | 1185 | 1115 | + synthase/transferase |
Gene Ontology | |
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GO Term | Description |
GO:0009058 | biosynthetic process |
GO:2001070 | starch binding |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACT09059.1 | 0 | 31 | 1186 | 41 | 1229 | starch synthase III precursor [Solanum lycopersicum] |
RefSeq | XP_002269011.1 | 0 | 62 | 1185 | 33 | 1140 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002305571.1 | 0.00000004 | 65 | 165 | 2 | 102 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002305571.1 | 0 | 209 | 1185 | 58 | 1017 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002518476.1 | 0 | 65 | 1185 | 2 | 1058 | starch synthase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3d1j_A | 0 | 737 | 1181 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 3guh_A | 0 | 737 | 1181 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 2r4u_A | 0 | 737 | 1181 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 2r4t_A | 0 | 737 | 1181 | 1 | 474 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
PDB | 2qzs_A | 0 | 737 | 1181 | 1 | 474 | A Chain A, Crystal Structure Of Wild-Type E.Coli Gs In Complex With Adp And Glucose(Wtgsb) |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO778003 | 699 | 274 | 972 | 0 |
HO794758 | 568 | 619 | 1186 | 0 |
HO778003 | 308 | 443 | 727 | 0.000000000000001 |
HO794758 | 101 | 292 | 386 | 1.2 |
HO794758 | 133 | 444 | 574 | 6.5 |
Sequence Alignments (This image is cropped. Click for full image.) |
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