Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.D01343.1 |
Family | PL4 |
Protein Properties | Length: 618 Molecular Weight: 69602.9 Isoelectric Point: 6.7923 |
Chromosome | Chromosome/Scaffold: 4 Start: 23943877 End: 23947551 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 2 | 597 | 0 |
MDNGLVKLTILKPQGFLTGVKYGGMDNLLDIKSNESGRGYWDANWSLPGGDDRYQLIKGAEYSVIHQSNDCLEVSFKSTYNPSAPGMALPLSVDTRYIIR TGVSGFYCYAIYERPQGCRAFDLAQTRMVFKLRQEKFHYMAITDEKQRVMPVPEDLLPGRGKQLIVPESVLLVNPVNPDLKGEVDDKYQYSMDNKDGGLH GWISSGPIIGFWVIVPSYEFRNGGPTKQNLTVHTGPACLAMCHSTHYIGDDILAHFGEGETWRKVFGPFFVYLNSTTKASKAHNLWSDAKKQRKIEETSW PYDFVSSPYYLAASERGSASGRLFVQDRYISSALIPAKNAYIGLSVARTEGAWQTESKSYQFWVQTESSGSFSIRNVIPGVYGLHGWVPGFIGDYLEKTL ITITADSETLLGNLTFVPLRHGPTLWEIGYPDRTAIDYFVPDVNPMYVNRLFLNGPEKFRQYGLWDRYTDIHPESDQVFTVGFNDPKKDWFFAHVDRRGP DKYLPTTWTIKFNLNSVTGGTYKLRLAVASATRSDLQVHINSLDQEHLVFQVMNLGTDNTVCRHGIYGLYRLFNFDISSSLLLKGDNSMYLTQARG |
Full Sequence |
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Protein Sequence Length: 618 Download |
MMDNGLVKLT ILKPQGFLTG VKYGGMDNLL DIKSNESGRG YWDANWSLPG GDDRYQLIKG 60 AEYSVIHQSN DCLEVSFKST YNPSAPGMAL PLSVDTRYII RTGVSGFYCY AIYERPQGCR 120 AFDLAQTRMV FKLRQEKFHY MAITDEKQRV MPVPEDLLPG RGKQLIVPES VLLVNPVNPD 180 LKGEVDDKYQ YSMDNKDGGL HGWISSGPII GFWVIVPSYE FRNGGPTKQN LTVHTGPACL 240 AMCHSTHYIG DDILAHFGEG ETWRKVFGPF FVYLNSTTKA SKAHNLWSDA KKQRKIEETS 300 WPYDFVSSPY YLAASERGSA SGRLFVQDRY ISSALIPAKN AYIGLSVART EGAWQTESKS 360 YQFWVQTESS GSFSIRNVIP GVYGLHGWVP GFIGDYLEKT LITITADSET LLGNLTFVPL 420 RHGPTLWEIG YPDRTAIDYF VPDVNPMYVN RLFLNGPEKF RQYGLWDRYT DIHPESDQVF 480 TVGFNDPKKD WFFAHVDRRG PDKYLPTTWT IKFNLNSVTG GTYKLRLAVA SATRSDLQVH 540 INSLDQEHLV FQVMNLGTDN TVCRHGIYGL YRLFNFDISS SLLLKGDNSM YLTQARGGDA 600 LCGILYDYIR LEAPATD* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10316 | RGL4_M | 2.0e-26 | 316 | 415 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 9.0e-42 | 427 | 612 | 190 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 3.0e-61 | 1 | 283 | 289 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 4.0e-70 | 1 | 185 | 185 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAD10227.1 | 0 | 2 | 615 | 27 | 643 | putative MYST1 [Oryza sativa Japonica Group] |
EMBL | CBI23231.1 | 0 | 1 | 616 | 1 | 617 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_001763359.1 | 0 | 1 | 616 | 2 | 622 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_001769727.1 | 0 | 1 | 614 | 5 | 620 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_002317123.1 | 0 | 1 | 616 | 16 | 631 | predicted protein [Populus trichocarpa] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GE473226 | 288 | 171 | 458 | 0 |
GW864372 | 311 | 129 | 439 | 0 |
CO473731 | 278 | 171 | 448 | 0 |
DV995349 | 288 | 171 | 458 | 0 |
DY969340 | 321 | 215 | 532 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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