Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.D01352.1 |
Family | PL1 |
Protein Properties | Length: 350 Molecular Weight: 38299.5 Isoelectric Point: 9.4051 |
Chromosome | Chromosome/Scaffold: 4 Start: 24023687 End: 24025138 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 70 | 269 | 0 |
ITFARDMKITLKNELMVNSYKTIDGRGAKVEIANGPCITLQYVSHVILHGISIHDCKPGKSGIVRDSPTHAGRRQGSDGDAISVFASSHIWVDHCFLARC TDGLIDVIRASTAVTISNNYFQQHDKVMLLGHNDKYTADKVMRVTVVFNRFGSGLIERMPRVRFGYAHVANNQYDEWRMYAIGGSANPTIFSEGNYFLAS |
Full Sequence |
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Protein Sequence Length: 350 Download |
MNVIDSCWRS NPKWAANRRA LADCAVGFGS NAIGGKYGSI YVVTSPLDDP VNPKPGMLRY 60 GAIQDKPLWI TFARDMKITL KNELMVNSYK TIDGRGAKVE IANGPCITLQ YVSHVILHGI 120 SIHDCKPGKS GIVRDSPTHA GRRQGSDGDA ISVFASSHIW VDHCFLARCT DGLIDVIRAS 180 TAVTISNNYF QQHDKVMLLG HNDKYTADKV MRVTVVFNRF GSGLIERMPR VRFGYAHVAN 240 NQYDEWRMYA IGGSANPTIF SEGNYFLASN NPVSKQVTKR ETKSGDWKSW KWRSSRDLFE 300 NGAYFVQSGY GSCAPLYSGT QSFAVADGSK VPALTSNAGP LSCTVGKAC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 4.0e-30 | 73 | 320 | 260 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 3.0e-65 | 81 | 266 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 2.0e-78 | 75 | 270 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_172656.1 | 0 | 2 | 349 | 37 | 384 | pectate lyase family protein [Arabidopsis thaliana] |
Swiss-Prot | O65388 | 0 | 2 | 349 | 37 | 390 | PEL2_ARATH RecName: Full=Putative pectate lyase 2; Flags: Precursor |
RefSeq | XP_002263615.1 | 0 | 1 | 349 | 50 | 397 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002317128.1 | 0 | 1 | 349 | 46 | 382 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002518442.1 | 0 | 1 | 349 | 43 | 390 | Pectate lyase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 2 | 342 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 2 | 342 | 2 | 346 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 4e-20 | 81 | 268 | 61 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1jta_A | 7e-16 | 81 | 275 | 80 | 296 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1jrg_B | 7e-16 | 81 | 275 | 80 | 296 | A Chain A, Crystal Structure Of The R3 Form Of Pectate Lyase A, Erwinia Chrysanthemi |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO778688 | 351 | 2 | 350 | 0 |
FG606120 | 315 | 2 | 314 | 0 |
FS081523 | 248 | 103 | 350 | 0 |
GT740031 | 306 | 12 | 314 | 0 |
CO097456 | 280 | 2 | 280 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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