Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.D01821.1 |
Family | GH28 |
Protein Properties | Length: 483 Molecular Weight: 52752.1 Isoelectric Point: 5.482 |
Chromosome | Chromosome/Scaffold: 4 Start: 32208255 End: 32211541 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 86 | 433 | 0 |
AQGGSQLFVPPGRWLTGSFNLTSHFTLYLHRDAVLLASQDESDWPLIDPLPSYGRGRDAVGGRYGSLLFGTNLTDIVITGDNGTIDGQGELWWQKFRGGK LNYTRPYLIEIMYSDKVQISNLTLLNSPSWNVHPVYSSNVIVQGITILAPTNSPNTDGINPDSCTNTKIEDCYIVSGDDCVAVKSGWDEYGIAYGMPTKQ LVIRRLTCISPTSAVIALGSEMSGGIEDVRAEDILAINSESGVRIKTAIGRGGYVKDIYVKGMTMRTMKWVFWMTGNYGSHADNNYDPNALPLIQNINYR DMVAENVTMAARLEGIAGDPFTGICISNVTIGLAQKPKKLQWNCTDIS |
Full Sequence |
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Protein Sequence Length: 483 Download |
MELLPNPCAK VEGLKRALAI VILVVMLFAT GAECRRKRHS DIIRYSAISC RAYSASVTEF 60 GGVGDGITLN TMAFQAAVNY LSQYEAQGGS QLFVPPGRWL TGSFNLTSHF TLYLHRDAVL 120 LASQDESDWP LIDPLPSYGR GRDAVGGRYG SLLFGTNLTD IVITGDNGTI DGQGELWWQK 180 FRGGKLNYTR PYLIEIMYSD KVQISNLTLL NSPSWNVHPV YSSNVIVQGI TILAPTNSPN 240 TDGINPDSCT NTKIEDCYIV SGDDCVAVKS GWDEYGIAYG MPTKQLVIRR LTCISPTSAV 300 IALGSEMSGG IEDVRAEDIL AINSESGVRI KTAIGRGGYV KDIYVKGMTM RTMKWVFWMT 360 GNYGSHADNN YDPNALPLIQ NINYRDMVAE NVTMAARLEG IAGDPFTGIC ISNVTIGLAQ 420 KPKKLQWNCT DISGISSSVV PPPCNALPNQ GPEKLPACNF PEDRLSIDEV EAQVCSYERK 480 HW* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 2.0e-17 | 56 | 350 | 310 | + polygalacturonase | ||
PLN02218 | PLN02218 | 2.0e-23 | 37 | 416 | 397 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 2.0e-25 | 57 | 350 | 305 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 1.0e-30 | 117 | 432 | 323 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 4.0e-61 | 40 | 351 | 337 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
Swiss-Prot | A7PZL3 | 0 | 32 | 477 | 40 | 485 | PGLR_VITVI RecName: Full=Probable polygalacturonase; Short=PG; AltName: Full=Pectinase |
RefSeq | XP_002278930.1 | 0 | 31 | 481 | 29 | 479 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002299511.1 | 0 | 23 | 481 | 21 | 479 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002303605.1 | 0 | 23 | 476 | 12 | 465 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002509850.1 | 0 | 31 | 481 | 29 | 479 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 1.96182e-44 | 54 | 420 | 27 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 1.96182e-44 | 54 | 420 | 27 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 1.96182e-44 | 54 | 420 | 27 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 1.96182e-44 | 54 | 420 | 27 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.00000000000003 | 71 | 390 | 26 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |