y
Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.E00090.1 |
Family | GH18 |
Protein Properties | Length: 297 Molecular Weight: 31225.1 Isoelectric Point: 4.7364 |
Chromosome | Chromosome/Scaffold: 5 Start: 797388 End: 798278 |
Description | chitinase A |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH18 | 28 | 246 | 1.3e-23 |
IAIYWGQNGNEGTLAEACASGNYKFVNLAFLNVFGNGQTPMINVAGHCDPSSGGCTGLSSEIKSCQARGVKVMLSIGGGVGSYYLPSAEDARYVATYLWD NFLGGQSSSRPLGDAVLDGIDFVIATGTNQHWDDLARYLSAYSISGKKVYLAAAPQCPYPDAWVGGALQTGLYDYVWVQFYGNPPCEYSSGNMGNLEDAW NQWTSIPAGEIFLGLPASA |
Full Sequence |
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Protein Sequence Length: 297 Download |
MASKSSTSPA FLFSMILALV VGINGGGIAI YWGQNGNEGT LAEACASGNY KFVNLAFLNV 60 FGNGQTPMIN VAGHCDPSSG GCTGLSSEIK SCQARGVKVM LSIGGGVGSY YLPSAEDARY 120 VATYLWDNFL GGQSSSRPLG DAVLDGIDFV IATGTNQHWD DLARYLSAYS ISGKKVYLAA 180 APQCPYPDAW VGGALQTGLY DYVWVQFYGN PPCEYSSGNM GNLEDAWNQW TSIPAGEIFL 240 GLPASADASS GFIPASNLTS IVLPTIKGSA KYGGVMLWSR YYDGQTRYSS TIKGSV* 300 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd06545 | GH18_3CO4_chitinase | 7.0e-5 | 53 | 289 | 255 | + The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas. | ||
cd02871 | GH18_chitinase_D-like | 4.0e-7 | 50 | 289 | 291 | + GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus. | ||
COG3469 | COG3469 | 7.0e-9 | 34 | 283 | 292 | + Chitinase [Carbohydrate transport and metabolism] | ||
pfam00704 | Glyco_hydro_18 | 3.0e-28 | 26 | 277 | 275 | + Glycosyl hydrolases family 18. | ||
cd02877 | GH18_hevamine_XipI_class_III | 1.0e-127 | 26 | 294 | 280 | + This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABF82271.1 | 0 | 1 | 296 | 1 | 298 | class III chitinase [Panax ginseng] |
RefSeq | XP_002279147.1 | 0 | 22 | 296 | 22 | 298 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002279182.1 | 0 | 22 | 296 | 22 | 298 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301383.1 | 0 | 1 | 296 | 1 | 298 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002461855.1 | 0 | 1 | 296 | 1 | 297 | hypothetical protein SORBIDRAFT_02g009370 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1kr1_A | 0 | 26 | 296 | 1 | 273 | A Chain A, Hevamine Mutant D125aE127A IN COMPLEX WITH TETRA-Nag |
PDB | 1kqz_A | 0 | 26 | 296 | 1 | 273 | A Chain A, Hevamine Mutant D125aE127A IN COMPLEX WITH TETRA-Nag |
PDB | 1kqy_A | 0 | 26 | 296 | 1 | 273 | A Chain A, Hevamine Mutant D125aE127AY183F IN COMPLEX WITH PENTA-Nag |
PDB | 1kr0_A | 0 | 26 | 296 | 1 | 273 | A Chain A, Hevamine Mutant D125aY183F IN COMPLEX WITH TETRA-Nag |
PDB | 2hvm_A | 0 | 26 | 296 | 1 | 273 | A Chain A, Hevamine Mutant D125aY183F IN COMPLEX WITH TETRA-Nag |