Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.E00104.1 |
Family | GH28 |
Protein Properties | Length: 482 Molecular Weight: 52594.2 Isoelectric Point: 8.3155 |
Chromosome | Chromosome/Scaffold: 5 Start: 932573 End: 935466 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 88 | 437 | 0 |
SAVGGGLLYVPAGRWLTGTFNLTSHFTLYLHRHAVLLASQDIKSWPLSDPLPSYGHGREAPGGRYMSFIFGTNLTDVIITGDNGKIDGQGGVWWNKFHKG SLKYTRPHLIEILHSRSIQISNLTLLNSPFWTVHPVYSSDIVIQGVTILAPVKSPNTDGIDPDSCTNTRIEDVHIVSGDDCVAVKSGWDEYGISYGMPTK QLVIRRLTCISPYSAMIALGSEMSGGIEDVRAEDITAINTESGVRIKTAMGRGGYVKDIYVRGMKMHTMKWAFWMDGNYGSHPDPHYDPKARPIITGINY RDIVAENVTMVAQLKGIPGNPFTGICISNATITMAPESKKEPWTCSDIHG |
Full Sequence |
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Protein Sequence Length: 482 Download |
MELKAKSPMK TQSQGMNRVT IWAVIVAFVV IAGGAEGRNV KTFNTFEYSA MSCRAHSASV 60 TEFGAIGDGK TLNTKAFEAA IAHLSRYSAV GGGLLYVPAG RWLTGTFNLT SHFTLYLHRH 120 AVLLASQDIK SWPLSDPLPS YGHGREAPGG RYMSFIFGTN LTDVIITGDN GKIDGQGGVW 180 WNKFHKGSLK YTRPHLIEIL HSRSIQISNL TLLNSPFWTV HPVYSSDIVI QGVTILAPVK 240 SPNTDGIDPD SCTNTRIEDV HIVSGDDCVA VKSGWDEYGI SYGMPTKQLV IRRLTCISPY 300 SAMIALGSEM SGGIEDVRAE DITAINTESG VRIKTAMGRG GYVKDIYVRG MKMHTMKWAF 360 WMDGNYGSHP DPHYDPKARP IITGINYRDI VAENVTMVAQ LKGIPGNPFT GICISNATIT 420 MAPESKKEPW TCSDIHGITS GVTPQPCGML PAETTTCHFP ERSLPIEEVK FKKCIYRGSH 480 A* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 2.0e-21 | 59 | 346 | 305 | + polygalacturonase | ||
PLN02218 | PLN02218 | 8.0e-25 | 57 | 445 | 409 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 4.0e-28 | 55 | 381 | 338 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 2.0e-34 | 155 | 436 | 293 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 1.0e-59 | 58 | 353 | 318 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
Swiss-Prot | A7PZL3 | 0 | 36 | 476 | 41 | 485 | PGLR_VITVI RecName: Full=Probable polygalacturonase; Short=PG; AltName: Full=Pectinase |
GenBank | AAP33475.1 | 0 | 24 | 476 | 8 | 470 | polygalacturonase-like protein [Fragaria x ananassa] |
RefSeq | XP_002277736.1 | 0 | 36 | 476 | 29 | 473 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002278930.1 | 0 | 34 | 480 | 29 | 479 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301370.1 | 0 | 34 | 480 | 19 | 469 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 9e-39 | 56 | 422 | 26 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 9e-39 | 56 | 422 | 26 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 9e-39 | 56 | 422 | 26 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 9e-39 | 56 | 422 | 26 | 413 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 3e-16 | 102 | 393 | 52 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |