Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.E00105.1 |
Family | GH28 |
Protein Properties | Length: 473 Molecular Weight: 51758.1 Isoelectric Point: 7.1507 |
Chromosome | Chromosome/Scaffold: 5 Start: 937813 End: 941068 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 76 | 424 | 0 |
DDGGVQLYVPAGKWLTGSFSLVSHFTLYLHRDAVLLASQDMTEWPALKPLPSYGRGRDAAAGRYQSLIFGTNLTDVIVTGDNGTIDGQGAFWWQKFHGGK LKYTRPYLIEFMFSDTIQISNLTLLNSPSWNVHPVYSSNILVQRITILAPVKSPNTDGINPDSCTNVRIEDCYIVSGDDCVAVKSGWDEYGIAFGMPTQQ LIIRRLTCISPYSATIALGSEMSGGIRDVRAEDIVAINTESGIRIKTAVGRGAYIKDIYVKKMTMHTMKWAFKMDGDYKSHPDNKYDPNALPVIQNINYR DMVAENVSVAARFNGIAGDKFTGICMANVTLGMTAKHKKYPWTCTDVQG |
Full Sequence |
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Protein Sequence Length: 473 Download |
MMIKMTSLLS VAVLVFLAYG GAEGRNMRRL DALEYTAMNC RAHSASLTDF GAVGDGQTSN 60 TKAFKAAVDQ LSKFADDGGV QLYVPAGKWL TGSFSLVSHF TLYLHRDAVL LASQDMTEWP 120 ALKPLPSYGR GRDAAAGRYQ SLIFGTNLTD VIVTGDNGTI DGQGAFWWQK FHGGKLKYTR 180 PYLIEFMFSD TIQISNLTLL NSPSWNVHPV YSSNILVQRI TILAPVKSPN TDGINPDSCT 240 NVRIEDCYIV SGDDCVAVKS GWDEYGIAFG MPTQQLIIRR LTCISPYSAT IALGSEMSGG 300 IRDVRAEDIV AINTESGIRI KTAVGRGAYI KDIYVKKMTM HTMKWAFKMD GDYKSHPDNK 360 YDPNALPVIQ NINYRDMVAE NVSVAARFNG IAGDKFTGIC MANVTLGMTA KHKKYPWTCT 420 DVQGMTSGVT PPPCDSLPDQ GPEKISACDF PANSLPIDEV QLKQCSYSMS YF* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 9.0e-22 | 50 | 376 | 337 | + polygalacturonase | ||
PLN03003 | PLN03003 | 1.0e-25 | 42 | 360 | 333 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 3.0e-30 | 44 | 435 | 406 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 1.0e-31 | 149 | 422 | 281 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 9.0e-57 | 45 | 340 | 319 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
Swiss-Prot | A7PZL3 | 0 | 22 | 472 | 40 | 490 | PGLR_VITVI RecName: Full=Probable polygalacturonase; Short=PG; AltName: Full=Pectinase |
GenBank | AAP33475.1 | 0 | 5 | 468 | 1 | 471 | polygalacturonase-like protein [Fragaria x ananassa] |
RefSeq | XP_002277736.1 | 0 | 22 | 472 | 28 | 478 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301370.1 | 0 | 16 | 472 | 14 | 470 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002511903.1 | 0 | 4 | 472 | 12 | 472 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 43 | 406 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 43 | 406 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 43 | 406 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 43 | 406 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 8e-17 | 77 | 406 | 37 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |