Basic Information | |
---|---|
Species | Eucalyptus grandis |
Cazyme ID | Eucgr.E00425.1 |
Family | CE8 |
Protein Properties | Length: 369 Molecular Weight: 40586.4 Isoelectric Point: 8.9235 |
Chromosome | Chromosome/Scaffold: 5 Start: 4059822 End: 4062924 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
CE8 | 67 | 358 | 0 |
ITVSINGSADFTSVQAAIDSIPENNRKNVTIRISAGCYIEKVVVPATKQFITFQGEGRDVTVIEWHDRASDRGANGQQLRTYRTASVTVFANYFSARNIS FKNTAPAPMPGKQGWQAVAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFRECYIEGSIDFIFGNGRSMYKDCQLHSIATRFGSIAAHGRKSPDEKTGFA FVGCRVTGTGQIYVGRAMGQYSRIVYSFTYFDDVVARGGWDDWDHASNKNKTVFFGVYRCFGPGAAATRGVSWARELEYDEAHRFLVKSFVN |
Full Sequence |
---|
Protein Sequence Length: 369 Download |
MADSTSSSSF FTFCCLAAFL LCFSRSPLQV AGSRRRGLGA DVADVGSSSN STGHHHRWIG 60 PVGHRLITVS INGSADFTSV QAAIDSIPEN NRKNVTIRIS AGCYIEKVVV PATKQFITFQ 120 GEGRDVTVIE WHDRASDRGA NGQQLRTYRT ASVTVFANYF SARNISFKNT APAPMPGKQG 180 WQAVAFRISG DKAYFSGCGF YGAQDTLCDD AGRHYFRECY IEGSIDFIFG NGRSMYKDCQ 240 LHSIATRFGS IAAHGRKSPD EKTGFAFVGC RVTGTGQIYV GRAMGQYSRI VYSFTYFDDV 300 VARGGWDDWD HASNKNKTVF FGVYRCFGPG AAATRGVSWA RELEYDEAHR FLVKSFVNGR 360 HWISPYDA* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02665 | PLN02665 | 4.0e-106 | 65 | 365 | 303 | + pectinesterase family protein | ||
PLN02304 | PLN02304 | 1.0e-111 | 67 | 368 | 310 | + probable pectinesterase | ||
PLN02671 | PLN02671 | 2.0e-114 | 63 | 363 | 303 | + pectinesterase | ||
PLN02682 | PLN02682 | 8.0e-135 | 57 | 365 | 323 | + pectinesterase family protein | ||
PLN02634 | PLN02634 | 0 | 48 | 368 | 321 | + probable pectinesterase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD64977.1 | 0 | 42 | 368 | 33 | 360 | pectinesterase family protein [Brassica oleracea] |
EMBL | CBI31927.1 | 0 | 8 | 368 | 2 | 349 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_199561.1 | 0 | 1 | 368 | 1 | 362 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002266321.1 | 0 | 43 | 368 | 31 | 356 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002303355.1 | 0 | 52 | 365 | 1 | 314 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 2.94273e-44 | 67 | 363 | 9 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 8e-34 | 69 | 363 | 7 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 9e-20 | 76 | 353 | 43 | 354 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 1qjv_B | 3e-17 | 77 | 349 | 18 | 332 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 3e-17 | 77 | 349 | 18 | 332 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |