Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.E00853.1 |
Family | GH28 |
Protein Properties | Length: 452 Molecular Weight: 47994.1 Isoelectric Point: 5.4113 |
Chromosome | Chromosome/Scaffold: 5 Start: 8972563 End: 8976769 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 81 | 425 | 0 |
GTLLHVPPGVYLTESFNLTSHMTLYLASGAVIKATQDTSNWPLIAPLPSYGRGRERPGGRYVSFIHGDGLQDVIITGENGTIDGQGDVWWNMWRQRTLSF TRPNLVELVNSRDIIISNVVFQNSPFWNIHPVYCSNVVVRNVTILAPVDSPNTDGIDPDSSSNVCIEDSYISVGDDVVSVKSGWDEYGIAYGRPSSNITI RRLTGSSPFAGIAIGSEMSGGIENVLVENVNLYKVGIGIHVKTNSGRGAFIRNITVSDVYVEDARKGIKISGDVGDHPDDGYDPNALPVVTGILVKDMRG TNVQQAGLIRGIKNSPFTGLCLSNVNLHGKPGPREDPWSCSDVSG |
Full Sequence |
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Protein Sequence Length: 452 Download |
MPPPPAGPAA VLLAAVAVAA LLATAAAGEE VVTCSGVVPM SDRVDRISIA DFGGVGDGRT 60 LNTKAFREAV YRIQHLARPG GTLLHVPPGV YLTESFNLTS HMTLYLASGA VIKATQDTSN 120 WPLIAPLPSY GRGRERPGGR YVSFIHGDGL QDVIITGENG TIDGQGDVWW NMWRQRTLSF 180 TRPNLVELVN SRDIIISNVV FQNSPFWNIH PVYCSNVVVR NVTILAPVDS PNTDGIDPDS 240 SSNVCIEDSY ISVGDDVVSV KSGWDEYGIA YGRPSSNITI RRLTGSSPFA GIAIGSEMSG 300 GIENVLVENV NLYKVGIGIH VKTNSGRGAF IRNITVSDVY VEDARKGIKI SGDVGDHPDD 360 GYDPNALPVV TGILVKDMRG TNVQQAGLIR GIKNSPFTGL CLSNVNLHGK PGPREDPWSC 420 SDVSGAAFKV SPSPCSELTS VSDRDSCANY S* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03003 | PLN03003 | 9.0e-18 | 47 | 407 | 373 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 2.0e-21 | 52 | 435 | 411 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 3.0e-24 | 47 | 409 | 375 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 2.0e-27 | 110 | 436 | 333 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 2.0e-47 | 48 | 413 | 397 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACC91250.1 | 0 | 9 | 449 | 7 | 442 | glycoside hydrolase family 28 protein [Arabidopsis halleri] |
EMBL | CBI34471.1 | 0 | 12 | 450 | 8 | 446 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_194113.1 | 0 | 21 | 449 | 15 | 442 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002304552.1 | 0 | 40 | 450 | 1 | 411 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002509949.1 | 0 | 15 | 450 | 12 | 445 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 1.00053e-42 | 47 | 409 | 28 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 1.00053e-42 | 47 | 409 | 28 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 1.00053e-42 | 47 | 409 | 28 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 1.00053e-42 | 47 | 409 | 28 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 2uvf_B | 5e-16 | 47 | 350 | 157 | 496 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |