Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.F00108.1 |
Family | CBM22 |
Protein Properties | Length: 932 Molecular Weight: 102696 Isoelectric Point: 6.5095 |
Chromosome | Chromosome/Scaffold: 6 Start: 1974267 End: 1979662 |
Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM22 | 217 | 353 | 1e-31 |
NIILNPIFDDGLKNWAGRGCKIVLHDSMADGKIVPQSGKYFVSATERTQTWNGIQQEVTGRLQRKLAYEVTALVRIFGNNVSSTDVRITLWTQTPDLREQ YIGVANVQATDKDWTQMQGKFLLNGSPSKVIIYIEGP | |||
CBM22 | 54 | 182 | 5e-35 |
NIIQNHNFSGGLHSWHPNCCESWVVSAESGDCYAMVTNRKECWQGLEQDITSRVTPGSTYSVSACVGVSGSLQGSADVLATLRLEHQDSAATYKRIGITS VSKERWDKVEGSFSLSSMPNRVVFYLEGP | |||
CBM22 | 388 | 529 | 1.54143e-44 |
NIIGNSDLDNGTNEWFPLGNCTLSVRAGSPHILPSSARDSLGPHEPLSGSYILVTNRTQTWMGPAQMITDKLKLFLTYQVSAWVRIGSGASGPQNINVAL GVDNQWVNGGQVEANDDRWHELSGSFRIEKQPSKVMVYIQGP | |||
GH10 | 587 | 862 | 0 |
QTQNSFPFGSCISRTNIDNEDFVDFFVKNFNWTVFGNELKWYWTEPQQGNFNYRDADEMLDLCKSHGIETRGHCIFWEVESTVQSWVRSLNNNDLMSAVQ NRLNGLLSRYKGKFSHYDVNNEMLHGSFYQDRLGKDIRANMFKTANQLDPSATLFVNDYHVEDGCDTKSCPEGYIEHILGLQEQGAPVGGIGIQGHIDNP VGPIINSALDKLGILGLPIWFTELDVSSVNEYVRADDLEVMLREAFAHPAVDGIMLWGFWELFMSRDNAHLVNAEG |
Full Sequence |
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Protein Sequence Length: 932 Download |
MRRVCACFLT SPAKTPPKHG TQRVSKQTAG NQKSESASNN SEVMANSSGS QGTNIIQNHN 60 FSGGLHSWHP NCCESWVVSA ESGDCYAMVT NRKECWQGLE QDITSRVTPG STYSVSACVG 120 VSGSLQGSAD VLATLRLEHQ DSAATYKRIG ITSVSKERWD KVEGSFSLSS MPNRVVFYLE 180 GPSSGIDLLI KSVVITCQSA NGKERVDREH IAAGDENIIL NPIFDDGLKN WAGRGCKIVL 240 HDSMADGKIV PQSGKYFVSA TERTQTWNGI QQEVTGRLQR KLAYEVTALV RIFGNNVSST 300 DVRITLWTQT PDLREQYIGV ANVQATDKDW TQMQGKFLLN GSPSKVIIYI EGPPAGTDIL 360 VNSLTVKHAA KAAPSPPPVI QNPAFGVNII GNSDLDNGTN EWFPLGNCTL SVRAGSPHIL 420 PSSARDSLGP HEPLSGSYIL VTNRTQTWMG PAQMITDKLK LFLTYQVSAW VRIGSGASGP 480 QNINVALGVD NQWVNGGQVE ANDDRWHELS GSFRIEKQPS KVMVYIQGPA PGVDLMVAGV 540 QIFPVDRQAR FNHLKHLTDK LRKRDVVLKF SGADSSSLVG ATVIVKQTQN SFPFGSCISR 600 TNIDNEDFVD FFVKNFNWTV FGNELKWYWT EPQQGNFNYR DADEMLDLCK SHGIETRGHC 660 IFWEVESTVQ SWVRSLNNND LMSAVQNRLN GLLSRYKGKF SHYDVNNEML HGSFYQDRLG 720 KDIRANMFKT ANQLDPSATL FVNDYHVEDG CDTKSCPEGY IEHILGLQEQ GAPVGGIGIQ 780 GHIDNPVGPI INSALDKLGI LGLPIWFTEL DVSSVNEYVR ADDLEVMLRE AFAHPAVDGI 840 MLWGFWELFM SRDNAHLVNA EGDVNEAGKR YLALRKEWSS HAHGHVNEQG EYTFRGFHGT 900 YDVLIVTSSK RTTKSIVVDK GESPLVVPIS L* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02018 | CBM_4_9 | 1.0e-17 | 54 | 184 | 135 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
pfam02018 | CBM_4_9 | 2.0e-18 | 217 | 357 | 143 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
COG3693 | XynA | 4.0e-39 | 567 | 845 | 300 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 1.0e-81 | 590 | 870 | 301 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 8.0e-83 | 625 | 870 | 267 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
GO:0016798 | hydrolase activity, acting on glycosyl bonds |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAX33301.1 | 0 | 30 | 931 | 9 | 915 | putative endo-1,4-beta-xylanase [Populus tremula x Populus tremuloides] |
RefSeq | XP_002283550.1 | 0 | 19 | 931 | 60 | 981 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301133.1 | 0 | 41 | 931 | 151 | 1049 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301133.1 | 0 | 54 | 537 | 2 | 479 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301133.1 | 0 | 216 | 542 | 1 | 314 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1xyz_B | 1e-28 | 595 | 845 | 40 | 307 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1xyz_A | 1e-28 | 595 | 845 | 40 | 307 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1i1x_A | 2e-28 | 594 | 844 | 18 | 268 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1i1w_A | 2e-28 | 594 | 844 | 18 | 268 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 2bnj_A | 4e-28 | 594 | 844 | 18 | 268 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EX570690 | 295 | 638 | 932 | 0 |
HO789518 | 280 | 631 | 910 | 0 |
EB442796 | 298 | 415 | 712 | 0 |
EB442796 | 116 | 251 | 366 | 0.000000002 |
EB442796 | 110 | 86 | 195 | 0.00000001 |
Sequence Alignments (This image is cropped. Click for full image.) |
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