Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.F00108.2 |
Family | CBM22 |
Protein Properties | Length: 928 Molecular Weight: 102253 Isoelectric Point: 6.4472 |
Chromosome | Chromosome/Scaffold: 6 Start: 1974267 End: 1979662 |
Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM22 | 213 | 349 | 9.9e-32 |
NIILNPIFDDGLKNWAGRGCKIVLHDSMADGKIVPQSGKYFVSATERTQTWNGIQQEVTGRLQRKLAYEVTALVRIFGNNVSSTDVRITLWTQTPDLREQ YIGVANVQATDKDWTQMQGKFLLNGSPSKVIIYIEGP | |||
CBM22 | 50 | 178 | 4.9e-35 |
NIIQNHNFSGGLHSWHPNCCESWVVSAESGDCYAMVTNRKECWQGLEQDITSRVTPGSTYSVSACVGVSGSLQGSADVLATLRLEHQDSAATYKRIGITS VSKERWDKVEGSFSLSSMPNRVVFYLEGP | |||
CBM22 | 384 | 525 | 1.54143e-44 |
NIIGNSDLDNGTNEWFPLGNCTLSVRAGSPHILPSSARDSLGPHEPLSGSYILVTNRTQTWMGPAQMITDKLKLFLTYQVSAWVRIGSGASGPQNINVAL GVDNQWVNGGQVEANDDRWHELSGSFRIEKQPSKVMVYIQGP | |||
GH10 | 583 | 858 | 0 |
QTQNSFPFGSCISRTNIDNEDFVDFFVKNFNWTVFGNELKWYWTEPQQGNFNYRDADEMLDLCKSHGIETRGHCIFWEVESTVQSWVRSLNNNDLMSAVQ NRLNGLLSRYKGKFSHYDVNNEMLHGSFYQDRLGKDIRANMFKTANQLDPSATLFVNDYHVEDGCDTKSCPEGYIEHILGLQEQGAPVGGIGIQGHIDNP VGPIINSALDKLGILGLPIWFTELDVSSVNEYVRADDLEVMLREAFAHPAVDGIMLWGFWELFMSRDNAHLVNAEG |
Full Sequence |
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Protein Sequence Length: 928 Download |
MRRVCACFLT SPAKTPPKHG TQRTAGNQKS ESASNNSEVM ANSSGSQGTN IIQNHNFSGG 60 LHSWHPNCCE SWVVSAESGD CYAMVTNRKE CWQGLEQDIT SRVTPGSTYS VSACVGVSGS 120 LQGSADVLAT LRLEHQDSAA TYKRIGITSV SKERWDKVEG SFSLSSMPNR VVFYLEGPSS 180 GIDLLIKSVV ITCQSANGKE RVDREHIAAG DENIILNPIF DDGLKNWAGR GCKIVLHDSM 240 ADGKIVPQSG KYFVSATERT QTWNGIQQEV TGRLQRKLAY EVTALVRIFG NNVSSTDVRI 300 TLWTQTPDLR EQYIGVANVQ ATDKDWTQMQ GKFLLNGSPS KVIIYIEGPP AGTDILVNSL 360 TVKHAAKAAP SPPPVIQNPA FGVNIIGNSD LDNGTNEWFP LGNCTLSVRA GSPHILPSSA 420 RDSLGPHEPL SGSYILVTNR TQTWMGPAQM ITDKLKLFLT YQVSAWVRIG SGASGPQNIN 480 VALGVDNQWV NGGQVEANDD RWHELSGSFR IEKQPSKVMV YIQGPAPGVD LMVAGVQIFP 540 VDRQARFNHL KHLTDKLRKR DVVLKFSGAD SSSLVGATVI VKQTQNSFPF GSCISRTNID 600 NEDFVDFFVK NFNWTVFGNE LKWYWTEPQQ GNFNYRDADE MLDLCKSHGI ETRGHCIFWE 660 VESTVQSWVR SLNNNDLMSA VQNRLNGLLS RYKGKFSHYD VNNEMLHGSF YQDRLGKDIR 720 ANMFKTANQL DPSATLFVND YHVEDGCDTK SCPEGYIEHI LGLQEQGAPV GGIGIQGHID 780 NPVGPIINSA LDKLGILGLP IWFTELDVSS VNEYVRADDL EVMLREAFAH PAVDGIMLWG 840 FWELFMSRDN AHLVNAEGDV NEAGKRYLAL RKEWSSHAHG HVNEQGEYTF RGFHGTYDVL 900 IVTSSKRTTK SIVVDKGESP LVVPISL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02018 | CBM_4_9 | 1.0e-17 | 50 | 180 | 135 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
pfam02018 | CBM_4_9 | 2.0e-18 | 213 | 353 | 143 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
COG3693 | XynA | 4.0e-39 | 563 | 841 | 300 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 1.0e-81 | 586 | 866 | 301 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 8.0e-83 | 621 | 866 | 267 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
GO:0016798 | hydrolase activity, acting on glycosyl bonds |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAX33301.1 | 0 | 22 | 927 | 5 | 915 | putative endo-1,4-beta-xylanase [Populus tremula x Populus tremuloides] |
RefSeq | XP_002283550.1 | 0 | 25 | 927 | 69 | 981 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301133.1 | 0 | 37 | 927 | 151 | 1049 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301133.1 | 0 | 50 | 533 | 2 | 479 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301133.1 | 0 | 212 | 538 | 1 | 314 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1xyz_B | 1e-28 | 591 | 841 | 40 | 307 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1xyz_A | 1e-28 | 591 | 841 | 40 | 307 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1i1x_A | 2e-28 | 590 | 840 | 18 | 268 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1i1w_A | 2e-28 | 590 | 840 | 18 | 268 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 1tux_A | 4e-28 | 619 | 840 | 47 | 268 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EX570690 | 295 | 634 | 928 | 0 |
HO789518 | 280 | 627 | 906 | 0 |
EB442796 | 298 | 411 | 708 | 0 |
EB442796 | 116 | 247 | 362 | 0.000000002 |
EB442796 | 110 | 82 | 191 | 0.00000001 |
Sequence Alignments (This image is cropped. Click for full image.) |
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