Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.F00108.3 |
Family | CBM22 |
Protein Properties | Length: 889 Molecular Weight: 98080.4 Isoelectric Point: 6.1431 |
Chromosome | Chromosome/Scaffold: 6 Start: 1974267 End: 1978370 |
Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM22 | 174 | 310 | 1.2e-31 |
NIILNPIFDDGLKNWAGRGCKIVLHDSMADGKIVPQSGKYFVSATERTQTWNGIQQEVTGRLQRKLAYEVTALVRIFGNNVSSTDVRITLWTQTPDLREQ YIGVANVQATDKDWTQMQGKFLLNGSPSKVIIYIEGP | |||
CBM22 | 11 | 139 | 5.8e-35 |
NIIQNHNFSGGLHSWHPNCCESWVVSAESGDCYAMVTNRKECWQGLEQDITSRVTPGSTYSVSACVGVSGSLQGSADVLATLRLEHQDSAATYKRIGITS VSKERWDKVEGSFSLSSMPNRVVFYLEGP | |||
CBM22 | 345 | 486 | 1.68156e-44 |
NIIGNSDLDNGTNEWFPLGNCTLSVRAGSPHILPSSARDSLGPHEPLSGSYILVTNRTQTWMGPAQMITDKLKLFLTYQVSAWVRIGSGASGPQNINVAL GVDNQWVNGGQVEANDDRWHELSGSFRIEKQPSKVMVYIQGP | |||
GH10 | 544 | 819 | 0 |
QTQNSFPFGSCISRTNIDNEDFVDFFVKNFNWTVFGNELKWYWTEPQQGNFNYRDADEMLDLCKSHGIETRGHCIFWEVESTVQSWVRSLNNNDLMSAVQ NRLNGLLSRYKGKFSHYDVNNEMLHGSFYQDRLGKDIRANMFKTANQLDPSATLFVNDYHVEDGCDTKSCPEGYIEHILGLQEQGAPVGGIGIQGHIDNP VGPIINSALDKLGILGLPIWFTELDVSSVNEYVRADDLEVMLREAFAHPAVDGIMLWGFWELFMSRDNAHLVNAEG |
Full Sequence |
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Protein Sequence Length: 889 Download |
MANSSGSQGT NIIQNHNFSG GLHSWHPNCC ESWVVSAESG DCYAMVTNRK ECWQGLEQDI 60 TSRVTPGSTY SVSACVGVSG SLQGSADVLA TLRLEHQDSA ATYKRIGITS VSKERWDKVE 120 GSFSLSSMPN RVVFYLEGPS SGIDLLIKSV VITCQSANGK ERVDREHIAA GDENIILNPI 180 FDDGLKNWAG RGCKIVLHDS MADGKIVPQS GKYFVSATER TQTWNGIQQE VTGRLQRKLA 240 YEVTALVRIF GNNVSSTDVR ITLWTQTPDL REQYIGVANV QATDKDWTQM QGKFLLNGSP 300 SKVIIYIEGP PAGTDILVNS LTVKHAAKAA PSPPPVIQNP AFGVNIIGNS DLDNGTNEWF 360 PLGNCTLSVR AGSPHILPSS ARDSLGPHEP LSGSYILVTN RTQTWMGPAQ MITDKLKLFL 420 TYQVSAWVRI GSGASGPQNI NVALGVDNQW VNGGQVEAND DRWHELSGSF RIEKQPSKVM 480 VYIQGPAPGV DLMVAGVQIF PVDRQARFNH LKHLTDKLRK RDVVLKFSGA DSSSLVGATV 540 IVKQTQNSFP FGSCISRTNI DNEDFVDFFV KNFNWTVFGN ELKWYWTEPQ QGNFNYRDAD 600 EMLDLCKSHG IETRGHCIFW EVESTVQSWV RSLNNNDLMS AVQNRLNGLL SRYKGKFSHY 660 DVNNEMLHGS FYQDRLGKDI RANMFKTANQ LDPSATLFVN DYHVEDGCDT KSCPEGYIEH 720 ILGLQEQGAP VGGIGIQGHI DNPVGPIINS ALDKLGILGL PIWFTELDVS SVNEYVRADD 780 LEVMLREAFA HPAVDGIMLW GFWELFMSRD NAHLVNAEGD VNEAGKRYLA LRKEWSSHAH 840 GHVNEQGEYT FRGFHGTYDV LIVTSSKRTT KSIVVDKGES PLVVPISL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02018 | CBM_4_9 | 1.0e-17 | 11 | 141 | 135 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
pfam02018 | CBM_4_9 | 2.0e-18 | 174 | 314 | 143 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
COG3693 | XynA | 5.0e-39 | 524 | 802 | 300 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 2.0e-81 | 547 | 827 | 301 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 1.0e-82 | 582 | 827 | 267 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
GO:0016798 | hydrolase activity, acting on glycosyl bonds |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAX33301.1 | 0 | 1 | 888 | 20 | 915 | putative endo-1,4-beta-xylanase [Populus tremula x Populus tremuloides] |
RefSeq | XP_002283550.1 | 0 | 4 | 888 | 87 | 981 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301133.1 | 0 | 1 | 888 | 154 | 1049 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301133.1 | 0 | 11 | 494 | 2 | 479 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301133.1 | 0 | 173 | 499 | 1 | 314 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1xyz_B | 1e-28 | 552 | 802 | 40 | 307 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1xyz_A | 1e-28 | 552 | 802 | 40 | 307 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1i1x_A | 2e-28 | 551 | 801 | 18 | 268 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1i1w_A | 2e-28 | 551 | 801 | 18 | 268 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 2bnj_A | 3e-28 | 551 | 801 | 18 | 268 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EX570690 | 295 | 595 | 889 | 0 |
HO789518 | 280 | 588 | 867 | 0 |
EB442796 | 298 | 372 | 669 | 0 |
EB442796 | 116 | 208 | 323 | 0.000000002 |
EB442796 | 110 | 43 | 152 | 0.00000001 |
Sequence Alignments (This image is cropped. Click for full image.) |
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