Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.F00109.1 |
Family | CBM22 |
Protein Properties | Length: 886 Molecular Weight: 97929.9 Isoelectric Point: 6.7635 |
Chromosome | Chromosome/Scaffold: 6 Start: 1983075 End: 1988412 |
Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM22 | 11 | 132 | 3.2e-27 |
NVIQNHNFSGGMHSWHPICCESWVVSAESGDCYAVVTNRKECWQGLGQDITSRLSPGSTYSVSACVGVSGYLQGSADVLATLRLEHQDSATTYKRIGMWD KVEGSFSLSCVPNRVVFYLEGP | |||
CBM22 | 167 | 303 | 6.1e-29 |
NIILNPVFDDGLNNWAGRGCKIVLEDSMADGKIVPQSGRYFASATGRTQTWNGIQQEVTGRLQRKLAYEVTALVRIFGNNVSNTGIQLTLWTQMPDLREQ YLGIAKVQATDKDWTRMQGKFLLNGSPSKIIISIAGP | |||
CBM22 | 338 | 479 | 4.40008e-43 |
NILENSDLKNGTNGWFPLGNCTLNIRTGSPHILPPLARESLEPHEPLSGRYILVTNRTQTWMGPAQVITNKLKLFLTYQVSSWVRIGSGASAPQNIKVAL NVDDQWVNGGQVEANDDRWYELSGSFRIEKQPSKVMVYIQGP | |||
GH10 | 537 | 816 | 0 |
QTKGSFPFGSCISRTNIDNEDYVDFFIKNFNWAVFENELKWNCTEPQQGKFNYRDADELLDLCKSHGIETRGHCIFWEVESTVQSWVRSLNNNDLMSAVQ NRLKGLLSRYKGRFNHYDVNNEMLHGSFFRDRLGNDIRANMFRTAHQLDPSATLFVNDYHVEIGIDPKSSPESYIEQILDLQEQGAPVGGIGIQGHIDSP VGPIISSALDKLGILGLPIWFTELDVSSANQHVRADDLEVMLREAFAHAAVDGIVLWGFWELLMFRSNAHLVNAEGDVNE |
Full Sequence |
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Protein Sequence Length: 886 Download |
MANSSGSQGT NVIQNHNFSG GMHSWHPICC ESWVVSAESG DCYAVVTNRK ECWQGLGQDI 60 TSRLSPGSTY SVSACVGVSG YLQGSADVLA TLRLEHQDSA TTYKRIGMWD KVEGSFSLSC 120 VPNRVVFYLE GPSPGIDLLI KSVVITCLSA NGRERVDRGC IAADDENIIL NPVFDDGLNN 180 WAGRGCKIVL EDSMADGKIV PQSGRYFASA TGRTQTWNGI QQEVTGRLQR KLAYEVTALV 240 RIFGNNVSNT GIQLTLWTQM PDLREQYLGI AKVQATDKDW TRMQGKFLLN GSPSKIIISI 300 AGPPAGTDIL VDSLTVKHAA KAAPSPPPII KNPAFGINIL ENSDLKNGTN GWFPLGNCTL 360 NIRTGSPHIL PPLARESLEP HEPLSGRYIL VTNRTQTWMG PAQVITNKLK LFLTYQVSSW 420 VRIGSGASAP QNIKVALNVD DQWVNGGQVE ANDDRWYELS GSFRIEKQPS KVMVYIQGPA 480 SGVDLMVAGF QIFPVDRHAR FKHLKKQTDK LRKRDVVLKF SGVDSSSLLG ATVIVKQTKG 540 SFPFGSCISR TNIDNEDYVD FFIKNFNWAV FENELKWNCT EPQQGKFNYR DADELLDLCK 600 SHGIETRGHC IFWEVESTVQ SWVRSLNNND LMSAVQNRLK GLLSRYKGRF NHYDVNNEML 660 HGSFFRDRLG NDIRANMFRT AHQLDPSATL FVNDYHVEIG IDPKSSPESY IEQILDLQEQ 720 GAPVGGIGIQ GHIDSPVGPI ISSALDKLGI LGLPIWFTEL DVSSANQHVR ADDLEVMLRE 780 AFAHAAVDGI VLWGFWELLM FRSNAHLVNA EGDVNEAGKR YLALRKEWSS HAHGHVDEQG 840 EFAFRGFHGT YDVEIVTASK RTTKSIVVDK GESPLVMSIS LSSRM* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02018 | CBM_4_9 | 1.0e-14 | 338 | 482 | 152 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
pfam02018 | CBM_4_9 | 2.0e-15 | 167 | 307 | 144 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
COG3693 | XynA | 2.0e-37 | 510 | 795 | 307 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
smart00633 | Glyco_10 | 4.0e-81 | 575 | 820 | 267 | + Glycosyl hydrolase family 10. | ||
pfam00331 | Glyco_hydro_10 | 3.0e-84 | 539 | 820 | 302 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
GO:0016798 | hydrolase activity, acting on glycosyl bonds |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAX33301.1 | 0 | 1 | 881 | 20 | 915 | putative endo-1,4-beta-xylanase [Populus tremula x Populus tremuloides] |
RefSeq | XP_002283550.1 | 0 | 4 | 881 | 87 | 981 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301133.1 | 0 | 1 | 881 | 154 | 1049 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301133.1 | 0 | 11 | 500 | 2 | 488 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301133.1 | 0 | 166 | 487 | 1 | 309 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nq6_A | 1e-33 | 544 | 816 | 15 | 291 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
PDB | 1i1x_A | 2e-33 | 537 | 815 | 11 | 289 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
PDB | 1i1w_A | 2e-33 | 537 | 815 | 11 | 289 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 1tux_A | 5e-33 | 539 | 815 | 13 | 289 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 2bnj_A | 6e-33 | 537 | 815 | 11 | 289 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GO850973 | 328 | 463 | 790 | 0 |
EX570690 | 294 | 588 | 881 | 0 |
EB442796 | 298 | 365 | 662 | 0 |
EB442796 | 116 | 201 | 316 | 0.0000005 |
EB442796 | 138 | 20 | 155 | 0.00001 |
Sequence Alignments (This image is cropped. Click for full image.) |
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