Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.F00439.1 |
Family | PL4 |
Protein Properties | Length: 697 Molecular Weight: 78684.4 Isoelectric Point: 4.9113 |
Chromosome | Chromosome/Scaffold: 6 Start: 5584563 End: 5589712 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 56 | 672 | 0 |
SGGVQVQVRDKYVVMDNGILQVNLSNPGGSVIGIQYNGVDNLLNELNGESNRGYWDVVWSAQKSNKTKGKLDRLDGTKFEVIVENDEQVELSFTRMWNLS LAGKVVPLNIDKRYVMLRGSSGFYTYAIYEHLAEWPTFTIGNTRTVLKLRKDKFRYMAIAANRQRYMPLPDDRLPDRGQVLAYPEAVRLINPVEPEFTGE VDDKYEYSCEGKDIQVHGWISTDPPMGVWQITPSYEFRSGGPVKQFLTSHVGPTSLNVFVSAHYSGVDLTMKFGPNEPWKKVFGPVFVYLNSMLDGEDPR SLWMDAKEQLIVEAESWPYKFPASEDYVQPSQRGNVTGRLLVLDRYISEECVTAYGAYVGLAPPGDAGSWQRETKGYQFWTRADEEGNFSISGIIPGQYN LYAWVSGFIGDYKYENNITISAASHINVGELVYEPPRSGPTLWEIGIPDRTASEYYIPDPDPQYINPLYINHPDRFRQYGLWERYTELYPDEDLIYSVGT SDYRKDWFFAQVTRETGNNTYNGTTWQIKFTTYSIDHTGTYKLQLALATAHISELQVRFNDANASSPLFSSGVIGRDNTIARHGIHGLYWLFSIDVPGTE LIKGENTIFLTQIGSTS |
Full Sequence |
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Protein Sequence Length: 697 Download |
MMMGLVRTAL FLMFFSAFLF HGLCVRRTEI DVVRHVGEAS GGDDEANAPG PSTPPSGGVQ 60 VQVRDKYVVM DNGILQVNLS NPGGSVIGIQ YNGVDNLLNE LNGESNRGYW DVVWSAQKSN 120 KTKGKLDRLD GTKFEVIVEN DEQVELSFTR MWNLSLAGKV VPLNIDKRYV MLRGSSGFYT 180 YAIYEHLAEW PTFTIGNTRT VLKLRKDKFR YMAIAANRQR YMPLPDDRLP DRGQVLAYPE 240 AVRLINPVEP EFTGEVDDKY EYSCEGKDIQ VHGWISTDPP MGVWQITPSY EFRSGGPVKQ 300 FLTSHVGPTS LNVFVSAHYS GVDLTMKFGP NEPWKKVFGP VFVYLNSMLD GEDPRSLWMD 360 AKEQLIVEAE SWPYKFPASE DYVQPSQRGN VTGRLLVLDR YISEECVTAY GAYVGLAPPG 420 DAGSWQRETK GYQFWTRADE EGNFSISGII PGQYNLYAWV SGFIGDYKYE NNITISAASH 480 INVGELVYEP PRSGPTLWEI GIPDRTASEY YIPDPDPQYI NPLYINHPDR FRQYGLWERY 540 TELYPDEDLI YSVGTSDYRK DWFFAQVTRE TGNNTYNGTT WQIKFTTYSI DHTGTYKLQL 600 ALATAHISEL QVRFNDANAS SPLFSSGVIG RDNTIARHGI HGLYWLFSID VPGTELIKGE 660 NTIFLTQIGS TSPFQGIMYD YIRLEGPPPS NSTNRF* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10316 | RGL4_M | 1.0e-31 | 387 | 486 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 1.0e-50 | 498 | 685 | 190 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 2.0e-68 | 61 | 347 | 290 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 2.0e-88 | 63 | 256 | 194 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI19298.1 | 0 | 58 | 694 | 5 | 651 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002527353.1 | 0 | 55 | 690 | 2 | 636 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527356.1 | 0 | 68 | 696 | 128 | 755 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527356.1 | 0 | 129 | 256 | 1 | 128 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527357.1 | 0 | 52 | 692 | 2 | 639 | lyase, putative [Ricinus communis] |