Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.F00441.1 |
Family | PL4 |
Protein Properties | Length: 647 Molecular Weight: 72704.7 Isoelectric Point: 5.0346 |
Chromosome | Chromosome/Scaffold: 6 Start: 5603341 End: 5608165 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 3 | 617 | 0 |
SSAVQLHIQDRHVVMDNGIVQVTLSKPEGIVTGIRYNGIDNLLEVLNDESNRGYWDLVWNAPGSSTGIFDVIKGTSFSVVVQSDDQVELSFTRTYDPSLE GKLVPLNIDKRFIMLRGSSGFYSYAIYEHLKDWPGFSLGETRIAFKLRKDKFHYMAMADNRQRNLPLPDDRTPPRGQPLAYPEAVLLVDPIEPELKGEVD DKYQYSCDNKDSKVHGWICSDPPVGFWLITPSNEFRTGGPVKQNLTSHVGPTTLAVFLSAHYTGDDLVPKFQAGEEWKKVFGPVFLYFNSVSDPVDPLFL WEGAKSQMMVEVESWPYSFLASEDFPPSDQRGNVHGRLLVSDRYVSDDYISANGAYVGLAPPGDVGSWQRECKLYQFWTTADEDGYFSINNARPGDYNLY AWVPRCIGDYKYGVPISIMPGSNMDVGDLIYKPPRDGPTMWEIGIPDRSAAEFYVPDPNPNYINKLYVNHPDRFRQYGLWERYAELYPDGDLVYTVGTSD YSKDWFFAQVTRKKDDKTYLGTTWQIKFALANVDKNGVYKLRIALASATLSELQVRVNNPKSNPVFSTGLIGRDNSIARHGIHGLYWLYSVDIKGTLLSE GDNIVFLTQPRSSSP |
Full Sequence |
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Protein Sequence Length: 647 Download |
MTSSAVQLHI QDRHVVMDNG IVQVTLSKPE GIVTGIRYNG IDNLLEVLND ESNRGYWDLV 60 WNAPGSSTGI FDVIKGTSFS VVVQSDDQVE LSFTRTYDPS LEGKLVPLNI DKRFIMLRGS 120 SGFYSYAIYE HLKDWPGFSL GETRIAFKLR KDKFHYMAMA DNRQRNLPLP DDRTPPRGQP 180 LAYPEAVLLV DPIEPELKGE VDDKYQYSCD NKDSKVHGWI CSDPPVGFWL ITPSNEFRTG 240 GPVKQNLTSH VGPTTLAVFL SAHYTGDDLV PKFQAGEEWK KVFGPVFLYF NSVSDPVDPL 300 FLWEGAKSQM MVEVESWPYS FLASEDFPPS DQRGNVHGRL LVSDRYVSDD YISANGAYVG 360 LAPPGDVGSW QRECKLYQFW TTADEDGYFS INNARPGDYN LYAWVPRCIG DYKYGVPISI 420 MPGSNMDVGD LIYKPPRDGP TMWEIGIPDR SAAEFYVPDP NPNYINKLYV NHPDRFRQYG 480 LWERYAELYP DGDLVYTVGT SDYSKDWFFA QVTRKKDDKT YLGTTWQIKF ALANVDKNGV 540 YKLRIALASA TLSELQVRVN NPKSNPVFST GLIGRDNSIA RHGIHGLYWL YSVDIKGTLL 600 SEGDNIVFLT QPRSSSPFQG IMYDYIRLES PPSSPSTSAA AASSGH* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10316 | RGL4_M | 3.0e-28 | 332 | 431 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 1.0e-54 | 443 | 629 | 189 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 3.0e-73 | 11 | 296 | 291 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 2.0e-98 | 1 | 201 | 201 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI19298.1 | 0 | 1 | 639 | 1 | 652 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002285626.1 | 0 | 17 | 639 | 1 | 623 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
RefSeq | XP_002301112.1 | 0 | 17 | 629 | 1 | 612 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527352.1 | 0 | 1 | 631 | 1 | 631 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527353.1 | 0 | 1 | 634 | 1 | 636 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DW479599 | 295 | 1 | 293 | 0 |
DW479600 | 297 | 1 | 295 | 0 |
DT552229 | 293 | 17 | 306 | 0 |
GO843311 | 289 | 5 | 293 | 0 |
DY293973 | 350 | 1 | 345 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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