Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.F00442.2 |
Family | PL4 |
Protein Properties | Length: 632 Molecular Weight: 72261.4 Isoelectric Point: 6.3733 |
Chromosome | Chromosome/Scaffold: 6 Start: 5608757 End: 5614677 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 6 | 616 | 0 |
VHLHIRHNQVIMDNGIVQVTLSKPDGIVIGVRYNGVDNLLEICNQESNRGYWDLVWNAPGSKGIFDVIKGTCFNVIVENEEQVELSFVRTWDFSLEGKYV PLNIDKRFIMLRGSSGFYSYAIYDHLADWPSFEIGETRITFKLRKDKFHYMAIADDRQRKMPLPDDRLPGRCQTLAYPEAVLLVNPVDPELRGEVDDKYQ YSCNNKDIQVHGWISSDPAIGFWQITPSDEFRSGGPLKQSLTSHVGPTTLAIFLSAHYAGKDLVPKFGPGEPWKKVFGPVFIYLNSASARDDPRFLWEDA KIQMMNEVERWPYNFPASEDFPKSHQRGNVRGRLLVQDRYVSNDYISAKRAYVGLAPPGDAGSWQRECKGYQFWTQADNDGYFSINNVRSGDYNLYAWVP GFIGDYRHDNIITISSGLDHDMGDLVYEPPREGATLWEIGIPDRSAAEFYVPDPDASYINRLYVHHPDRFRQYGLWSRYGELYPEKDLVYTIGVSDHTKD WFFAQVPRRKQDGSHEGTTWQIKFNLSYVERSKSHKLRIAIASATLAELQVRVNDPKARRPLFTSGLIGRDNSIARHGIQGLYWLFNVNVPGTLLNEGEN TIFLTQPRCDS |
Full Sequence |
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Protein Sequence Length: 632 Download |
MSTPGVHLHI RHNQVIMDNG IVQVTLSKPD GIVIGVRYNG VDNLLEICNQ ESNRGYWDLV 60 WNAPGSKGIF DVIKGTCFNV IVENEEQVEL SFVRTWDFSL EGKYVPLNID KRFIMLRGSS 120 GFYSYAIYDH LADWPSFEIG ETRITFKLRK DKFHYMAIAD DRQRKMPLPD DRLPGRCQTL 180 AYPEAVLLVN PVDPELRGEV DDKYQYSCNN KDIQVHGWIS SDPAIGFWQI TPSDEFRSGG 240 PLKQSLTSHV GPTTLAIFLS AHYAGKDLVP KFGPGEPWKK VFGPVFIYLN SASARDDPRF 300 LWEDAKIQMM NEVERWPYNF PASEDFPKSH QRGNVRGRLL VQDRYVSNDY ISAKRAYVGL 360 APPGDAGSWQ RECKGYQFWT QADNDGYFSI NNVRSGDYNL YAWVPGFIGD YRHDNIITIS 420 SGLDHDMGDL VYEPPREGAT LWEIGIPDRS AAEFYVPDPD ASYINRLYVH HPDRFRQYGL 480 WSRYGELYPE KDLVYTIGVS DHTKDWFFAQ VPRRKQDGSH EGTTWQIKFN LSYVERSKSH 540 KLRIAIASAT LAELQVRVND PKARRPLFTS GLIGRDNSIA RHGIQGLYWL FNVNVPGTLL 600 NEGENTIFLT QPRCDSPFQG LMYDYLRLEG P* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10316 | RGL4_M | 8.0e-35 | 331 | 430 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 3.0e-49 | 442 | 629 | 190 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 9.0e-76 | 13 | 297 | 291 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 2.0e-104 | 1 | 200 | 200 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI19298.1 | 0 | 1 | 631 | 1 | 644 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002285626.1 | 0 | 17 | 631 | 1 | 615 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
RefSeq | XP_002306520.1 | 0 | 17 | 631 | 1 | 615 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527352.1 | 0 | 1 | 631 | 1 | 631 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527353.1 | 0 | 1 | 631 | 1 | 633 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GW864372 | 311 | 144 | 454 | 0 |
DY293973 | 350 | 1 | 344 | 0 |
DW479599 | 294 | 1 | 291 | 0 |
DW479600 | 296 | 1 | 293 | 0 |
DT552229 | 293 | 17 | 305 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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