Basic Information | |
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Species | Eucalyptus grandis |
Cazyme ID | Eucgr.F00632.1 |
Family | GH28 |
Protein Properties | Length: 389 Molecular Weight: 41414.1 Isoelectric Point: 8.1172 |
Chromosome | Chromosome/Scaffold: 6 Start: 8329196 End: 8331028 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 48 | 376 | 0 |
GACRSKGTNVIVIPSGTYLLGPVVLTGPCNGAIAFLIKGALRASNSPQLGIDHWITFRFIDRLTITGGVLDGQGAASWPYNDCSKNPNCKALPVTMRFDF VTNAWIHDVTSLNSKNFHFNLFSCRDMTFEHVTITAPKDSPNTDGIHMAHSSNITIRDSAIGTGDDCISLGPGSENIKMTGIACGPGHGVSIGSLGGSPN EPPVTNVFLGSSTFTGTMNALRIKTKAPSYQGVVTDITFQDIFVKDAGNPIIIDQQYCPSKTCSPQSSRVKISEVRFRNIEGTSSSLVAVNINCSPAAPC TGIELRDINLEYDGREGGRTSSVCANAKG |
Full Sequence |
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Protein Sequence Length: 389 Download |
MSLLMLMLFL ALAKNQAQAR TVFNIKDFGA VGDGKTDNKK ALYDVWNGAC RSKGTNVIVI 60 PSGTYLLGPV VLTGPCNGAI AFLIKGALRA SNSPQLGIDH WITFRFIDRL TITGGVLDGQ 120 GAASWPYNDC SKNPNCKALP VTMRFDFVTN AWIHDVTSLN SKNFHFNLFS CRDMTFEHVT 180 ITAPKDSPNT DGIHMAHSSN ITIRDSAIGT GDDCISLGPG SENIKMTGIA CGPGHGVSIG 240 SLGGSPNEPP VTNVFLGSST FTGTMNALRI KTKAPSYQGV VTDITFQDIF VKDAGNPIII 300 DQQYCPSKTC SPQSSRVKIS EVRFRNIEGT SSSLVAVNIN CSPAAPCTGI ELRDINLEYD 360 GREGGRTSSV CANAKGAFYG KQNPPSCL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-83 | 18 | 375 | 369 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 1.0e-90 | 19 | 388 | 374 | + polygalacturonase | ||
PLN02793 | PLN02793 | 1.0e-91 | 22 | 388 | 379 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 2.0e-103 | 50 | 387 | 339 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 1.0e-124 | 21 | 387 | 372 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAA89477.1 | 0 | 16 | 387 | 24 | 393 | polygalacturonase [Salix gilgiana] |
Swiss-Prot | Q6H9K0 | 0 | 21 | 384 | 8 | 372 | PGLR2_PLAAC RecName: Full=Exopolygalacturonase; AltName: Full=Pollen allergen Pla a 2; AltName: Allergen=Pla a 2; Flags: Precursor |
RefSeq | XP_002273801.1 | 0 | 3 | 388 | 11 | 396 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002329175.1 | 0 | 2 | 387 | 9 | 393 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002526193.1 | 0 | 1 | 375 | 5 | 379 | hypothetical protein RCOM_0764760 [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ib4_B | 2e-17 | 110 | 373 | 74 | 332 | A Chain A, E27q Mutant Of Exo-B-(1,3)-Glucanase From Candida Albicans At 1.85 A |
PDB | 1ib4_A | 2e-17 | 110 | 373 | 74 | 332 | A Chain A, E27q Mutant Of Exo-B-(1,3)-Glucanase From Candida Albicans At 1.85 A |
PDB | 1ia5_A | 2e-17 | 110 | 373 | 74 | 332 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 1bhe_A | 2e-17 | 115 | 360 | 117 | 364 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1czf_B | 6e-17 | 108 | 373 | 95 | 355 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |